Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M1Y13_RS09285 Genome accession   NZ_CP096902
Coordinates   1923084..1924511 (-) Length   475 a.a.
NCBI ID   WP_000980597.1    Uniprot ID   -
Organism   Escherichia coli strain RSHH22     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1918084..1929511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1Y13_RS09255 (M1Y13_09260) yeeZ 1918139..1918963 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  M1Y13_RS09260 (M1Y13_09265) yeeY 1919009..1919938 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  M1Y13_RS09265 (M1Y13_09270) yoeI 1920153..1920215 (+) 63 WP_010723108.1 membrane protein YoeI -
  M1Y13_RS09270 (M1Y13_09275) plaP 1920205..1921563 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  M1Y13_RS09275 (M1Y13_09280) tsuA 1921742..1922800 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  M1Y13_RS09280 (M1Y13_09285) tsuB 1922814..1923041 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  M1Y13_RS09285 (M1Y13_09290) sbcB 1923084..1924511 (-) 1428 WP_000980597.1 exodeoxyribonuclease I Machinery gene
  M1Y13_RS09290 (M1Y13_09295) dacD 1924720..1925886 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  M1Y13_RS09295 (M1Y13_09300) sbmC 1926005..1926478 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  M1Y13_RS09300 (M1Y13_09305) - 1926676..1927227 (+) 552 Protein_1823 FUSC family protein -
  M1Y13_RS09305 (M1Y13_09310) - 1927420..1928400 (+) 981 WP_000399648.1 IS110-like element IS621 family transposase -
  M1Y13_RS09310 (M1Y13_09315) - 1928495..1929013 (+) 519 Protein_1825 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54474.78 Da        Isoelectric Point: 5.4700

>NTDB_id=591108 M1Y13_RS09285 WP_000980597.1 1923084..1924511(-) (sbcB) [Escherichia coli strain RSHH22]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=591108 M1Y13_RS09285 WP_000980597.1 1923084..1924511(-) (sbcB) [Escherichia coli strain RSHH22]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCTATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581