Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KZR01_RS28960 Genome accession   NZ_CP080098
Coordinates   3858035..3858553 (-) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3853035..3863553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZR01_RS28935 rimM 3853087..3853635 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  KZR01_RS28940 rpsP 3853664..3853912 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  KZR01_RS28945 ffh 3854123..3855505 (-) 1383 WP_005446242.1 signal recognition particle protein -
  KZR01_RS28950 - 3855719..3856513 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  KZR01_RS28955 - 3856668..3857942 (+) 1275 WP_005446238.1 HlyC/CorC family transporter -
  KZR01_RS28960 luxS 3858035..3858553 (-) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  KZR01_RS28965 - 3858639..3859202 (-) 564 WP_005448430.1 hypothetical protein -
  KZR01_RS28970 gshA 3859264..3860832 (-) 1569 WP_061065381.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=591095 KZR01_RS28960 WP_005448429.1 3858035..3858553(-) (luxS) [Vibrio harveyi strain]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=591095 KZR01_RS28960 WP_005448429.1 3858035..3858553(-) (luxS) [Vibrio harveyi strain]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855