Detailed information NTG0591087

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: KZR01_RS23300
• Genome accession: NZ_CP080098
• Coordinates: 2813220..2814641 (+)
• Length: 473 a.a.
• NCBI ID: WP_061065114.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2808220..2819641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KZR01_RS23280	-	2808561..2809172 (-)	612	WP_061065112.1	flavin reductase family protein	-
KZR01_RS23285	-	2809900..2810595 (+)	696	WP_017818004.1	NAD(P)H-binding protein	-
KZR01_RS23290	-	2810790..2812163 (+)	1374	WP_050939031.1	L-cystine transporter	-
KZR01_RS23295	-	2812378..2813058 (+)	681	WP_061065113.1	DUF1826 domain-containing protein	-
KZR01_RS23300	sbcB	2813220..2814641 (+)	1422	WP_061065114.1	exodeoxyribonuclease I	Machinery gene
KZR01_RS23305	-	2814700..2815074 (+)	375	WP_005445537.1	CidA/LrgA family protein	-
KZR01_RS23310	-	2815076..2815753 (+)	678	WP_005445538.1	LrgB family protein	-
KZR01_RS23315	cdd	2816009..2816896 (+)	888	WP_005445539.1	cytidine deaminase	-
KZR01_RS23320	purT	2817045..2818220 (+)	1176	WP_061065115.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
KZR01_RS23325	-	2818297..2818947 (-)	651	WP_061065116.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54581.97 Da
• Isoelectric Point: 4.9808

>NTDB_id=591087 KZR01_RS23300 WP_061065114.1 2813220..2814641(+) (sbcB) [Vibrio harveyi strain]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMIPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=591087 KZR01_RS23300 WP_061065114.1 2813220..2814641(+) (sbcB) [Vibrio harveyi strain]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATTGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGATTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCCG
TACCAGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.07	100	0.791