Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KZR01_RS14750 Genome accession   NZ_CP080098
Coordinates   942645..943652 (-) Length   335 a.a.
NCBI ID   WP_005450580.1    Uniprot ID   K5TI37
Organism   Vibrio harveyi strain     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 937645..948652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZR01_RS14720 - 937739..938173 (-) 435 Protein_857 DUF2787 domain-containing protein -
  KZR01_RS14725 radC 938170..938647 (-) 478 Protein_858 DNA repair protein RadC -
  KZR01_RS14730 - 939051..939275 (+) 225 WP_259556618.1 hypothetical protein -
  KZR01_RS14735 hslU 939701..941032 (-) 1332 WP_009698879.1 HslU--HslV peptidase ATPase subunit -
  KZR01_RS14740 hslV 941062..941613 (-) 552 WP_009698878.1 ATP-dependent protease subunit HslV -
  KZR01_RS14745 - 941934..942479 (-) 546 WP_005450581.1 SPOR domain-containing protein -
  KZR01_RS14750 cytR 942645..943652 (-) 1008 WP_005450580.1 DNA-binding transcriptional regulator CytR Regulator
  KZR01_RS14755 priA 943859..946060 (-) 2202 WP_061065559.1 primosomal protein N' -
  KZR01_RS14760 rpmE 946357..946578 (+) 222 WP_005450576.1 50S ribosomal protein L31 -
  KZR01_RS14765 rpsJ 947035..947346 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  KZR01_RS14770 rplC 947361..947990 (+) 630 WP_005435072.1 50S ribosomal protein L3 -
  KZR01_RS14775 rplD 948008..948610 (+) 603 WP_005435074.1 50S ribosomal protein L4 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36918.48 Da        Isoelectric Point: 5.9796

>NTDB_id=591077 KZR01_RS14750 WP_005450580.1 942645..943652(-) (cytR) [Vibrio harveyi strain]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKEEQYSIVADFSFEGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=591077 KZR01_RS14750 WP_005450580.1 942645..943652(-) (cytR) [Vibrio harveyi strain]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCTACGGTATCGCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCATCAACAAGAAAGAGAGTGGAAGATGCCGTACTTGAAGCTGGTTATTCACCGAATTCATTAGCTCGTAATT
TACGTAGAAATGAATCAAAGACCATTGTCACTATCGTACCGGACATATGCGATCCGTATTTCTCTGAAATCATTCGCGGT
ATCGAAGATGCAGCAATGGAACACGGTTACCTAGTTCTTCTTGGCGATAGCGGTCAGCAGAAAAAGCGCGAAAGCTCATT
CGTAAACTTAGTATTCACCAAGCAAGCTGATGGCATGTTACTACTGGGCACCGACTTACCATTCGATGTCAGCAAGCCAG
AGCAGAAAAACCTACCACCAATGGTCATGGCGTGCGAATTCGCTCCTGAGCTGGAACTACCAACGGTGCATATCGATAAC
TTGACCTCTGCATTTGAAGCCGTGAACTACCTGACGCAACTTGGTCACAAGCGTATTGCTCAGATCTCTGGTCCAGATAC
TGCGGTGCTGTGCCAGTTCCGCCAACAAGGTTACCAACAAGCACTTCGCCGTGCTGGTATTAGTAAAGAAGAGCAATACA
GCATTGTGGCTGACTTCTCTTTCGAAGGTGGCGTTCAAGCCGTACGCAAACTTCTCGAACTGCCTGAACCACCAACCGCT
CTATTCTGTCACTGTGACACCATGGCGATTGGTGCTATTCAAGAGGCGAAACGTCTTGGTCTGCGTATTCCGCAGGATTT
GTCGGTTGTCGGCTTTGATGATATTCAATTCGCGCAATACTGCGATCCACCGTTAACCACCATCTCTCAACCACGTTATG
AGATTGGTCGCCAAGCAATGTTAATGATGCTAGAGCTACTGAAAGGTCACGATGTGCACTCAGGCTCTCGCTTGCTTGAA
ACTAAATTAGTTGTGCGTGGTAGTGCAGCGCCACCACCTTTGCGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K5TI37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

96.386

99.104

0.955
  cytR Vibrio cholerae C6706

90.663

99.104

0.899