Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   MSA_RS02165 Genome accession   NC_021486
Coordinates   375834..376559 (+) Length   241 a.a.
NCBI ID   WP_000912307.1    Uniprot ID   A0AAV3JGZ9
Organism   Streptococcus agalactiae ILRI005     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 370834..381559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS02135 (MSA_4380) tsaE 371637..372080 (+) 444 WP_000500159.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  MSA_RS02140 (MSA_4390) - 372073..372594 (+) 522 WP_016480329.1 GNAT family N-acetyltransferase -
  MSA_RS02145 (MSA_4400) - 372603..373910 (+) 1308 WP_016480330.1 LCP family protein -
  MSA_RS02150 (MSA_4410) - 373974..374270 (-) 297 WP_000690178.1 hypothetical protein -
  MSA_RS02155 (MSA_4420) - 374267..374686 (-) 420 WP_000368098.1 HIT family protein -
  MSA_RS02160 (MSA_4430) - 375022..375525 (+) 504 WP_000773456.1 hypothetical protein -
  MSA_RS11065 - 375577..375762 (-) 186 Protein_348 hypothetical protein -
  MSA_RS02165 (MSA_4440) pptA 375834..376559 (+) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  MSA_RS02170 (MSA_4450) pptB 376561..377595 (+) 1035 WP_016480331.1 ABC transporter permease Regulator
  MSA_RS02175 (MSA_4460) - 377653..378453 (+) 801 WP_000155919.1 phosphotransferase family protein -
  MSA_RS02180 (MSA_4470) trmB 378443..379078 (+) 636 WP_016480332.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  MSA_RS02190 (MSA_4490) rimP 379567..380043 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  MSA_RS02195 (MSA_4500) nusA 380079..381230 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  MSA_RS02200 (MSA_4510) - 381252..381548 (+) 297 WP_016480333.1 YlxR family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26835.26 Da        Isoelectric Point: 4.5704

>NTDB_id=59106 MSA_RS02165 WP_000912307.1 375834..376559(+) (pptA) [Streptococcus agalactiae ILRI005]
MLKIENVTGGYVNIPVLKNISFEVNDGELVGLIGLNGAGKSTTINEIIGILRPYQGDITIDGISLEADQELYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDIATDEVMARAQKLLEMFRLTDKLDWFPMHFSKGMKQKVMIICAFVVSPSLFIVDEPF
LGLDPLAISDLINLLAEEKAKGKSILMSTHVLDSAEKMCDRFVILHKGEIRAVGTLEELRAIFGDSNANLNDIYIALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=59106 MSA_RS02165 WP_000912307.1 375834..376559(+) (pptA) [Streptococcus agalactiae ILRI005]
ATGTTAAAAATTGAAAATGTTACAGGGGGGTATGTTAATATCCCAGTTTTAAAAAATATTTCTTTTGAAGTAAATGATGG
AGAGTTAGTTGGATTAATTGGGCTTAATGGTGCAGGAAAATCAACCACTATTAACGAGATTATTGGTATTTTGAGACCCT
ATCAAGGAGATATTACAATTGATGGTATTAGTCTTGAAGCCGACCAAGAACTTTATAGAAAGAAAATAGGCTTTATTCCT
GAGACACCAAGTCTCTATGAGGAACTAACTCTCAGGGAACATTTAGAAACGGTAGCTATGGCGTATGATATTGCCACCGA
TGAAGTTATGGCACGTGCGCAAAAACTATTAGAGATGTTTCGTCTAACAGATAAATTAGACTGGTTTCCAATGCATTTTT
CAAAGGGAATGAAACAAAAGGTTATGATTATCTGTGCTTTTGTTGTATCTCCAAGTTTATTTATTGTTGATGAACCATTT
TTAGGTTTGGATCCACTAGCTATTTCAGATTTGATTAATCTTCTAGCAGAAGAAAAAGCTAAAGGGAAATCTATTTTGAT
GTCAACACACGTATTAGATTCTGCCGAAAAAATGTGTGATCGTTTTGTTATTTTACATAAAGGAGAAATACGGGCAGTTG
GAACCCTAGAGGAATTACGGGCTATTTTTGGAGACAGTAATGCTAATTTAAATGACATCTACATAGCTCTGACAAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.824

99.17

0.772
  pptA Streptococcus salivarius strain HSISS4

77.406

99.17

0.768

Multiple sequence alignment