Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   KZR01_RS10095 Genome accession   NZ_CP080098
Coordinates   13482..14465 (-) Length   327 a.a.
NCBI ID   WP_005452115.1    Uniprot ID   A0A812FCY7
Organism   Vibrio harveyi strain     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 8482..19465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZR01_RS10080 recA 9014..10057 (-) 1044 WP_005436413.1 recombinase RecA Machinery gene
  KZR01_RS10085 pncC 10259..10741 (-) 483 WP_009703950.1 nicotinamide-nucleotide amidase -
  KZR01_RS10090 mutS 10827..13388 (+) 2562 WP_047512941.1 DNA mismatch repair protein MutS -
  KZR01_RS10095 rpoS 13482..14465 (-) 984 WP_005452115.1 RNA polymerase sigma factor RpoS Regulator
  KZR01_RS10100 - 14546..15469 (-) 924 WP_009698767.1 peptidoglycan DD-metalloendopeptidase family protein -
  KZR01_RS10105 - 15484..16110 (-) 627 WP_005452113.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  KZR01_RS10110 surE 16110..16886 (-) 777 WP_009698768.1 5'/3'-nucleotidase SurE -
  KZR01_RS10115 truD 16886..17929 (-) 1044 WP_061065384.1 tRNA pseudouridine(13) synthase TruD -
  KZR01_RS10120 ispF 17975..18451 (-) 477 WP_005425365.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  KZR01_RS10125 ispD 18466..19176 (-) 711 WP_038899663.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KZR01_RS10130 ftsB 19178..19459 (-) 282 WP_005452106.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37236.10 Da        Isoelectric Point: 4.7232

>NTDB_id=591057 KZR01_RS10095 WP_005452115.1 13482..14465(-) (rpoS) [Vibrio harveyi strain]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide


Download         Length: 984 bp        

>NTDB_id=591057 KZR01_RS10095 WP_005452115.1 13482..14465(-) (rpoS) [Vibrio harveyi strain]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 2 (Sigma70_r2)

(88-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FCY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.832

100

0.856