Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KZJ38_RS21080 Genome accession   NZ_CP080095
Coordinates   4751813..4753330 (+) Length   505 a.a.
NCBI ID   WP_219798078.1    Uniprot ID   -
Organism   Paraburkholderia edwinii strain Pe01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4746813..4758330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZJ38_RS21055 (KZJ38_21055) kdsD 4747884..4748867 (+) 984 WP_219798073.1 arabinose 5-phosphate isomerase KdsD -
  KZJ38_RS21060 (KZJ38_21060) - 4748867..4749403 (+) 537 WP_219798074.1 HAD family hydrolase -
  KZJ38_RS21065 (KZJ38_21065) lptC 4749419..4750006 (+) 588 WP_219798075.1 LPS export ABC transporter periplasmic protein LptC -
  KZJ38_RS21070 (KZJ38_21070) lptA 4750037..4750651 (+) 615 Protein_4156 lipopolysaccharide transport periplasmic protein LptA -
  KZJ38_RS21075 (KZJ38_21075) lptB 4750789..4751571 (+) 783 WP_219798077.1 LPS export ABC transporter ATP-binding protein -
  KZJ38_RS21080 (KZJ38_21080) rpoN/rpoN1 4751813..4753330 (+) 1518 WP_219798078.1 RNA polymerase factor sigma-54 Machinery gene
  KZJ38_RS21085 (KZJ38_21085) raiA 4753501..4753860 (+) 360 WP_075155714.1 ribosome-associated translation inhibitor RaiA -
  KZJ38_RS21090 (KZJ38_21090) - 4754135..4754650 (+) 516 WP_219798079.1 PTS sugar transporter subunit IIA -
  KZJ38_RS21095 (KZJ38_21095) hprK 4754873..4755841 (+) 969 WP_075155712.1 HPr(Ser) kinase/phosphatase -
  KZJ38_RS21100 (KZJ38_21100) rapZ 4755928..4756821 (+) 894 WP_219798080.1 RNase adapter RapZ -
  KZJ38_RS21105 (KZJ38_21105) - 4756861..4757496 (+) 636 WP_219798081.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55448.67 Da        Isoelectric Point: 4.8768

>NTDB_id=591048 KZJ38_RS21080 WP_219798078.1 4751813..4753330(+) (rpoN/rpoN1) [Paraburkholderia edwinii strain Pe01]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAISQNPLLETEDDWIASPLRVAADGSVIAQAPSPSAPEPMA
SAPSSSSTSTSGETSENSEPQGVDEYNGLASDSNADANQWNLDDYGRSGNASDDDDLPPLQIHESATMLRDHLTAQLRVT
GASPRDRALITFLIESLDDDGYLTATLDEVLIDLPDELEVDLDELNAALALLQSFDPAGVGARSASECLKLQLCRLEPSP
TRTLALEIVAHHLELLAARDFTRLRKHLKANDDDLRDAHMLIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWLAELNP
EVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=591048 KZJ38_RS21080 WP_219798078.1 4751813..4753330(+) (rpoN/rpoN1) [Paraburkholderia edwinii strain Pe01]
ATGAAAGCTAGCCTCCAACTTCGCCTGTCACAGCATCTTGCGCTGACACCCCAACTGCAGCAGTCCATCCGGCTGCTGCA
GCTGTCTACGCTTGAGTTGCAGCAGGAGGTGTCGATGGCGATCTCGCAGAATCCGCTGCTCGAAACCGAGGACGACTGGA
TCGCGAGTCCATTGCGCGTCGCGGCCGACGGCTCGGTGATCGCGCAGGCGCCGAGCCCCAGTGCACCCGAGCCGATGGCG
AGCGCGCCGTCGTCCAGCAGCACTTCCACGTCTGGCGAAACCTCGGAGAACAGCGAGCCGCAAGGCGTCGACGAATACAA
TGGCCTCGCGTCGGACAGCAATGCCGATGCAAATCAATGGAATCTGGACGATTACGGTCGTTCCGGCAACGCGTCCGACG
ACGACGACTTGCCGCCGTTGCAAATCCACGAATCCGCGACCATGCTGCGCGATCATCTGACCGCGCAATTGCGTGTCACG
GGAGCCAGCCCGCGCGATCGCGCGCTCATCACGTTCCTGATCGAATCGCTCGACGACGACGGTTACCTGACCGCGACGCT
CGACGAGGTGCTCATCGATCTGCCCGACGAACTCGAAGTCGATCTCGACGAACTGAATGCTGCGCTTGCTCTCTTGCAAA
GCTTCGATCCAGCCGGTGTCGGCGCGCGCTCGGCATCGGAATGCCTGAAGCTGCAGCTGTGCCGGCTCGAGCCGTCGCCC
ACCCGCACGCTCGCGCTCGAAATCGTGGCTCACCATCTGGAGCTGCTTGCCGCGCGCGATTTCACGCGCCTGCGCAAGCA
CCTGAAAGCGAACGACGACGACCTACGCGACGCGCATATGCTGATCCGCTCGCTCGAACCGTTCCCCGGCGCCGCGTATG
GCAAGGCCGAAGCAGACTATGTCGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGTTGGCTGGCCGAACTCAATCCG
GAAGTGGTACCGAAGCTGCGCATCAACCATCTGTACGCGAATATTCTGCGCAACAACCGTGGTGATCCGGGCAGTGGATC
GCTGCGTCAACAACTACAGGAAGCGCGCTGGCTCATCAAAAATATCCAGCAAAGATTCGAAACGATACTGCGTGTCGCGC
AGGCTATTGTCGAGCGTCAAAAGAATTTTTTTGCCCATGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATTGCT
GATACGCTGGGTCTACACGAGTCGACAGTCTCGCGTGTGACAACCGGGAAGTACATGCTCACCCCGTTCGGGACGCTTGA
ATTTAAGTACTTCTTCGGATCTCACGTATCGACCGACACTGGGGGCGCGGCCTCTTCCACGGCCATTCGCGCACTCATCA
AGCAACTGATAGGAGCAGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCCGAGCAAGGTTTC
GTAGTCGCACGGCGTACCGTAGCGAAATACCGCGAAGCATTGAAGATCCCGGCAGTCAATCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(142-332)

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.119

100

0.681