Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   M1783_RS01420 Genome accession   NZ_CP096894
Coordinates   296412..296738 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain Mu1956     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 291412..301738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1783_RS01395 (M1783_01395) - 291861..292628 (+) 768 WP_000897421.1 uroporphyrinogen-III synthase -
  M1783_RS01400 (M1783_01400) - 292637..293476 (+) 840 WP_001230204.1 hypothetical protein -
  M1783_RS01405 (M1783_01405) - 293486..294709 (+) 1224 WP_284627572.1 heme biosynthesis protein HemY -
  M1783_RS01410 (M1783_01410) - 294636..295604 (-) 969 WP_012308653.1 IS30 family transposase -
  M1783_RS01415 (M1783_01415) - 295777..296217 (+) 441 WP_000661570.1 thioesterase family protein -
  M1783_RS01420 (M1783_01420) hns 296412..296738 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  M1783_RS01425 (M1783_01425) gspN 297071..297814 (+) 744 WP_000730343.1 type II secretion system protein N -
  M1783_RS01430 (M1783_01430) - 297814..298650 (+) 837 WP_000870033.1 type II secretion system protein N -
  M1783_RS01435 (M1783_01435) gspD 298692..300968 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  M1783_RS01440 (M1783_01440) - 301009..301638 (+) 630 WP_000219967.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=591007 M1783_RS01420 WP_000801427.1 296412..296738(+) (hns) [Acinetobacter baumannii strain Mu1956]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=591007 M1783_RS01420 WP_000801427.1 296412..296738(+) (hns) [Acinetobacter baumannii strain Mu1956]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1