Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MYF74_RS08700 Genome accession   NZ_CP096837
Coordinates   1856354..1857781 (-) Length   475 a.a.
NCBI ID   WP_187205583.1    Uniprot ID   -
Organism   Escherichia coli strain PS10-3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1851354..1862781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF74_RS08670 (MYF74_08670) yeeZ 1851409..1852233 (+) 825 WP_112044179.1 SDR family oxidoreductase -
  MYF74_RS08675 (MYF74_08675) yeeY 1852279..1853208 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  MYF74_RS08680 (MYF74_08680) yoeI 1853423..1853485 (+) 63 WP_010723108.1 membrane protein YoeI -
  MYF74_RS08685 (MYF74_08685) plaP 1853475..1854833 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MYF74_RS08690 (MYF74_08690) tsuA 1855012..1856070 (+) 1059 WP_074511709.1 thiosulfate utilization transporter TsuA/YeeE -
  MYF74_RS08695 (MYF74_08695) tsuB 1856084..1856311 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MYF74_RS08700 (MYF74_08700) sbcB 1856354..1857781 (-) 1428 WP_187205583.1 exodeoxyribonuclease I Machinery gene
  MYF74_RS08705 (MYF74_08705) dacD 1857990..1859156 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MYF74_RS08710 (MYF74_08710) sbmC 1859275..1859748 (+) 474 WP_112044148.1 DNA gyrase inhibitor SbmC -
  MYF74_RS08715 (MYF74_08715) yeeA 1859947..1861005 (+) 1059 WP_001200891.1 FUSC family protein -
  MYF74_RS08720 (MYF74_08720) tmaR 1861177..1861506 (+) 330 WP_000450409.1 DUF496 family protein -
  MYF74_RS08725 (MYF74_08725) - 1861607..1861903 (-) 297 Protein_1712 EutP/PduV family microcompartment system protein -
  MYF74_RS08730 (MYF74_08730) - 1861882..1862241 (+) 360 WP_097680070.1 cobalamin biosynthesis protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54475.78 Da        Isoelectric Point: 5.6086

>NTDB_id=590953 MYF74_RS08700 WP_187205583.1 1856354..1857781(-) (sbcB) [Escherichia coli strain PS10-3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLAKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGNNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVAMLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=590953 MYF74_RS08700 WP_187205583.1 1856354..1857781(-) (sbcB) [Escherichia coli strain PS10-3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGCAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCAATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAGAAAGTGGCGATGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577