Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   MSA_RS01030 Genome accession   NC_021486
Coordinates   164921..165967 (+) Length   348 a.a.
NCBI ID   WP_016480225.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 159921..170967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS01015 (MSA_2130) - 161179..162834 (+) 1656 WP_016480223.1 peptide ABC transporter substrate-binding protein -
  MSA_RS01020 (MSA_2140) - 162953..163867 (+) 915 WP_000598964.1 ABC transporter permease -
  MSA_RS01025 (MSA_2150) - 163877..164908 (+) 1032 WP_016480224.1 ABC transporter permease -
  MSA_RS01030 (MSA_2160) oppD 164921..165967 (+) 1047 WP_016480225.1 ABC transporter ATP-binding protein Regulator
  MSA_RS01035 (MSA_2170) amiF 165967..166899 (+) 933 WP_000138506.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38687.17 Da        Isoelectric Point: 4.7572

>NTDB_id=59095 MSA_RS01030 WP_016480225.1 164921..165967(+) (oppD) [Streptococcus agalactiae ILRI005]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGDVQFKGRNLVEL
SEEDWSKVRGNVISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=59095 MSA_RS01030 WP_016480225.1 164921..165967(+) (oppD) [Streptococcus agalactiae ILRI005]
ATGGAAAAAGAAACTATTTTAAGCGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCGATTCG
CGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGGATGTCCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGATTGGAGTAAGGTACGCGGAAATGTGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCATGCAAATAGCAGAACCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAACTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAATGATTACCCACATCAGTGGTCTGGAGGAATG
CGTCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGATCGTGTAGCAGTTATGTATGCAGGGAAAATTGTTGAATTTGGAACTGTT
GATGAGGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCAGGAACACCACCAGATTTGTTGAATCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATTCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.539

99.713

0.793
  amiE Streptococcus salivarius strain HSISS4

55.457

97.414

0.54
  amiE Streptococcus thermophilus LMG 18311

54.867

97.414

0.534
  amiE Streptococcus thermophilus LMD-9

54.867

97.414

0.534

Multiple sequence alignment