Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KZO16_RS13655 Genome accession   NZ_CP080075
Coordinates   2824490..2825119 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 19SZHZ663Rt     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2819490..2830119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO16_RS13640 (KZO16_13645) helD 2819732..2821786 (-) 2055 WP_000420533.1 DNA helicase IV -
  KZO16_RS13645 (KZO16_13650) yccF 2821909..2822355 (+) 447 WP_001261231.1 YccF domain-containing protein -
  KZO16_RS13650 (KZO16_13655) yccS 2822365..2824527 (+) 2163 WP_000875020.1 YccS family putative transporter -
  KZO16_RS13655 (KZO16_13660) sxy/tfoX 2824490..2825119 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KZO16_RS13660 (KZO16_13665) sulA 2825338..2825847 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KZO16_RS13665 (KZO16_13670) ompA 2826204..2827244 (+) 1041 WP_000750416.1 porin OmpA -
  KZO16_RS13670 (KZO16_13675) matP 2827320..2827772 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KZO16_RS13675 (KZO16_13680) ycbZ 2827958..2829718 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=590934 KZO16_RS13655 WP_000839153.1 2824490..2825119(-) (sxy/tfoX) [Escherichia coli strain 19SZHZ663Rt]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=590934 KZO16_RS13655 WP_000839153.1 2824490..2825119(-) (sxy/tfoX) [Escherichia coli strain 19SZHZ663Rt]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1