Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MSA_RS00830 Genome accession   NC_021486
Coordinates   121428..122792 (+) Length   454 a.a.
NCBI ID   WP_016480201.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 116428..127792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS00805 (MSA_1690) rpoE 117138..117713 (+) 576 WP_000418426.1 DNA-directed RNA polymerase subunit delta -
  MSA_RS00810 (MSA_1700) - 117986..119590 (+) 1605 WP_016480200.1 CTP synthase -
  MSA_RS00815 (MSA_1710) - 119699..120625 (+) 927 WP_000723853.1 alpha/beta hydrolase -
  MSA_RS00825 (MSA_1730) - 120820..121266 (+) 447 WP_000049181.1 dUTP diphosphatase -
  MSA_RS00830 (MSA_1740) radA 121428..122792 (+) 1365 WP_016480201.1 DNA repair protein RadA Machinery gene
  MSA_RS00835 (MSA_1750) - 122928..123425 (+) 498 WP_000214743.1 carbonic anhydrase -
  MSA_RS00840 (MSA_1760) - 123579..124898 (+) 1320 WP_000759710.1 FAD-containing oxidoreductase -
  MSA_RS00845 (MSA_1770) gltX 125108..126562 (+) 1455 WP_001284497.1 glutamate--tRNA ligase -
  MSA_RS00850 (MSA_1780) - 126602..127570 (-) 969 WP_016480202.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49608.93 Da        Isoelectric Point: 6.5115

>NTDB_id=59093 MSA_RS00830 WP_016480201.1 121428..122792(+) (radA) [Streptococcus agalactiae ILRI005]
MAKKKSVFTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSCEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIE
KIKPDFLIIDSIQTIMSPEVSSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIR
RVTRIEQRINEASKLGFTKIYAPKNSLAGIEIPKGIDVIGVTTVSQVLKAVFST

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=59093 MSA_RS00830 WP_016480201.1 121428..122792(+) (radA) [Streptococcus agalactiae ILRI005]
GTGGCTAAGAAAAAATCAGTCTTCACCTGTCAAGAGTGTGGTTACCAATCACCTAAGTATTTGGGACGTTGTCCAAATTG
CTCAGCCTGGTCTTCATTTGTAGAAGAGGTTGAAGTTCAAGAAGTTAAAAATGCACGAGTTAGTTTGAACGGTGAAAAGT
CCCGACCGACGAAGTTAAAAGATGTTTCCTCAATTAACTATTCTAGAACTAAGACTGATATGGATGAATTTAACCGTGTT
CTAGGAGGTGGTGTTGTACCAGGAAGTTTGGTTCTGATTGGAGGAGACCCTGGGATAGGTAAATCTACTTTATTACTACA
AGTATCAACTCAGCTAGCTAATAAAGGTACAGTATTATATGTCTCATGTGAGGAATCTGCAGAACAGATTAAGTTACGAA
GTGAGCGTCTAGGCGATATCGATAATGAATTTTACCTTTATGCCGAGACTAATATGCAAAGTATTCGGTCGGAGATTGAG
AAGATTAAACCAGATTTTCTTATTATTGATTCTATACAAACTATTATGAGTCCCGAAGTATCAAGTGTCCAAGGCTCTGT
TAGCCAAGTTCGCGAAGTGACCGCTGAGTTGATGCAGTTAGCTAAAACTAATAATATTGCTACTTTTATTGTAGGTCATG
TGACTAAGGAGGGAACATTAGCAGGCCCTCGAATGCTAGAACATATGGTGGATACGGTTCTTTATTTTGAAGGGGAGCGT
CATCACACGTTCCGTATTTTACGGGCAGTCAAAAACCGTTTTGGTTCGACCAATGAAATAGGTATCTTTGAAATGCAGTC
GGGTGGTCTAGTTGAAGTTTTGAATCCAAGTCAAGTTTTTCTTGAAGAACGTTTAGACGGTGCAACAGGATCTGCTATTG
TTGTTACTATGGAAGGAACAAGGCCTATTTTAGCAGAGGTTCAAGCTTTAGTGACTCCGACTGTTTTTGGAAATGCTAAG
CGTACAACAACAGGTCTTGACTTTAATCGTGTCAGCCTTATTATGGCAGTTCTAGAAAAACGTTGTGGTTTATTGCTTCA
AAATCAAGATGCCTATTTAAAATCAGCGGGTGGTGTTAAATTGGATGAACCAGCAATTGATTTAGCTGTTGCTGTAGCTA
TTGCTTCCAGTTACAAAGAAAAACCCACAAATCCACAAGAATCATTTATTGGAGAAATTGGACTCACTGGTGAGATTCGT
CGCGTGACACGTATTGAGCAACGTATTAATGAGGCTAGTAAATTGGGCTTTACTAAAATTTACGCACCAAAGAATTCTCT
AGCTGGGATTGAAATACCTAAAGGCATTGATGTTATTGGTGTGACGACTGTTAGTCAGGTCTTAAAAGCAGTATTTTCAA
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

87.859

99.78

0.877
  radA Streptococcus pneumoniae D39

87.859

99.78

0.877
  radA Streptococcus pneumoniae R6

87.859

99.78

0.877
  radA Streptococcus pneumoniae TIGR4

87.859

99.78

0.877
  radA Streptococcus mitis NCTC 12261

87.859

99.78

0.877
  radA Streptococcus mitis SK321

87.638

99.78

0.874
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.78

0.626

Multiple sequence alignment