Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MYF75_RS23885 Genome accession   NZ_CP096834
Coordinates   4612346..4613773 (-) Length   475 a.a.
NCBI ID   WP_087599308.1    Uniprot ID   -
Organism   Escherichia coli strain PM4-5     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4607346..4618773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF75_RS23855 (MYF75_23855) yeeZ 4607401..4608225 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  MYF75_RS23860 (MYF75_23860) yeeY 4608271..4609200 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  MYF75_RS23865 (MYF75_23865) yoeI 4609415..4609477 (+) 63 WP_010723108.1 membrane protein YoeI -
  MYF75_RS23870 (MYF75_23870) plaP 4609467..4610825 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MYF75_RS23875 (MYF75_23875) tsuA 4611004..4612062 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  MYF75_RS23880 (MYF75_23880) tsuB 4612076..4612303 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MYF75_RS23885 (MYF75_23885) sbcB 4612346..4613773 (-) 1428 WP_087599308.1 exodeoxyribonuclease I Machinery gene
  MYF75_RS23890 (MYF75_23890) dacD 4613982..4615148 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MYF75_RS23895 (MYF75_23895) sbmC 4615267..4615740 (+) 474 WP_113441095.1 DNA gyrase inhibitor SbmC -
  MYF75_RS23900 (MYF75_23900) yeeA 4615938..4616996 (+) 1059 WP_096925964.1 FUSC family protein -
  MYF75_RS23905 (MYF75_23905) tmaR 4617168..4617497 (+) 330 WP_000450409.1 DUF496 family protein -
  MYF75_RS23910 (MYF75_23910) - 4617598..4618041 (-) 444 WP_001189436.1 EutP/PduV family microcompartment system protein -
  MYF75_RS23915 (MYF75_23915) pduU 4618046..4618396 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54443.72 Da        Isoelectric Point: 5.6070

>NTDB_id=590915 MYF75_RS23885 WP_087599308.1 4612346..4613773(-) (sbcB) [Escherichia coli strain PM4-5]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=590915 MYF75_RS23885 WP_087599308.1 4612346..4613773(-) (sbcB) [Escherichia coli strain PM4-5]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581