Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MYF75_RS18955 Genome accession   NZ_CP096834
Coordinates   3588961..3590952 (+) Length   663 a.a.
NCBI ID   WP_000098609.1    Uniprot ID   Q3YXT6
Organism   Escherichia coli strain PM4-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3583961..3595952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF75_RS18930 (MYF75_18930) - 3584420..3585169 (+) 750 WP_000380263.1 PTS sugar transporter subunit IIC -
  MYF75_RS18935 (MYF75_18935) - 3585166..3586026 (+) 861 WP_160370941.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  MYF75_RS18940 (MYF75_18940) dgaE 3586030..3587139 (+) 1110 WP_000193113.1 D-glucosaminate-6-phosphate ammonia lyase -
  MYF75_RS18945 (MYF75_18945) - 3587126..3587869 (+) 744 WP_001169551.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  MYF75_RS18950 (MYF75_18950) loiP 3587925..3588683 (-) 759 WP_001297457.1 metalloprotease LoiP -
  MYF75_RS18955 (MYF75_18955) recP/tkt 3588961..3590952 (+) 1992 WP_000098609.1 transketolase Machinery gene
  MYF75_RS18960 (MYF75_18960) cmtB 3591266..3591709 (+) 444 WP_001239650.1 PTS mannitol transporter subunit IIA -
  MYF75_RS18965 (MYF75_18965) cmtA 3591737..3593125 (+) 1389 WP_000428805.1 PTS mannitol transporter subunit IICB -
  MYF75_RS18970 (MYF75_18970) yggP 3593140..3594417 (+) 1278 WP_000853221.1 zinc-binding dehydrogenase -
  MYF75_RS18975 (MYF75_18975) glpX 3594414..3595379 (+) 966 WP_000987277.1 class II fructose-bisphosphatase -
  MYF75_RS18980 (MYF75_18980) fumE 3595401..3595910 (+) 510 WP_000224138.1 fumarase E -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 72225.77 Da        Isoelectric Point: 5.4041

>NTDB_id=590902 MYF75_RS18955 WP_000098609.1 3588961..3590952(+) (recP/tkt) [Escherichia coli strain PM4-5]
MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGY
DLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMME
GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSL
LMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQ
EAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA
AGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA
SLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSE
VELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIIGMTTFGESAP
AELLFEEFGFTVDNVVAKAKELL

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=590902 MYF75_RS18955 WP_000098609.1 3588961..3590952(+) (recP/tkt) [Escherichia coli strain PM4-5]
ATGTCCTCACGTAAAGAGCTTGCCAATGCTATTCGTGCGCTGAGCATGGACGCAGTACAGAAAGCCAAATCCGGTCACCC
GGGTGCCCCTATGGGTATGGCTGACATTGCCGAAGTCCTGTGGCGTGATTTCCTGAAACACAACCCGCAGAATCCGTCCT
GGGCTGACCGTGACCGCTTCGTGCTGTCCAACGGCCACGGCTCCATGCTGATCTACAGCCTGCTGCACCTCACCGGTTAC
GATCTGCCGATGGAAGAACTGAAAAACTTCCGTCAGCTGCACTCTAAAACTCCGGGTCACCCGGAAGTGGGTTACACCGC
TGGTGTGGAAACCACCACCGGTCCGCTGGGTCAGGGTATTGCCAACGCAGTCGGTATGGCGATTGCAGAAAAAACGCTGG
CGGCGCAGTTTAACCGTCCGGGCCACGACATTGTCGACCACTACACCTATGCCTTCATGGGCGACGGCTGCATGATGGAA
GGCATCTCCCACGAAGTTTGCTCTCTGGCGGGTACGCTGAAGCTGGGTAAACTGATTGCGTTCTACGATGACAACGGTAT
CTCTATTGATGGTCACGTTGAAGGCTGGTTCACCGACGACACCGCAATGCGTTTCGAAGCTTACGGCTGGCACGTTATTC
GCGACATCGACGGTCATGACGCGGCATCCATCAAACGCGCAGTAGAAGAAGCGCGCGCAGTGACTGACAAACCGTCCCTG
CTGATGTGCAAAACCATCATCGGTTTCGGTTCCCCGAACAAAGCCGGTACTCACGACTCCCACGGTGCGCCGCTGGGCGA
CGCTGAAATTGCCCTGACCCGCGAACAGCTGGGCTGGAAATATGCACCGTTCGAAATCCCGTCTGAAATCTATGCTCAGT
GGGATGCGAAAGAAGCAGGCCAGGCGAAAGAATCCGCATGGAACGAGAAATTCGCTGCTTACGCGAAAGCTTATCCGCAG
GAAGCCGCTGAATTTACCCGCCGTATGAAAGGCGAAATGCCGTCTGACTTCGACGCGAAAGCAAAAGAGTTCATTGCTAA
ACTGCAGGCTAACCCGGCGAAAATCGCCAGCCGTAAAGCGTCTCAGAATGCTATCGAAGCTTTCGGTCCGCTGTTGCCGG
AATTCCTCGGCGGTTCTGCTGACCTGGCACCGTCTAACCTGACCCTGTGGTCTGGTTCTAAAGCAATCAACGAAGATGCT
GCAGGTAACTACATCCACTACGGTGTTCGCGAGTTCGGTATGACCGCGATTGCTAACGGCATCTCCCTGCACGGTGGTTT
CCTGCCGTACACCTCCACCTTCCTGATGTTCGTGGAATACGCACGTAACGCCGTACGTATGGCTGCGCTGATGAAACAGC
GTCAGGTGATGGTTTACACCCACGACTCCATCGGTCTGGGCGAAGACGGCCCGACTCACCAGCCGGTTGAGCAGGTCGCT
TCTCTGCGCGTGACCCCGAACATGTCTACATGGCGTCCGTGTGACCAGGTTGAATCCGCGGTCGCGTGGAAATACGGTGT
TGAGCGTCAGGACGGCCCGACTGCGCTGATCCTCTCCCGTCAGAACCTGGCGCAGCAGGAGCGTACTGAAGAGCAACTGG
CAAACATCGCGCGCGGTGGTTATGTACTGAAAGACTGCGCCGGTCAGCCGGAACTGATTTTCATCGCTACCGGTTCAGAA
GTTGAACTGGCGGTTGCTGCCTACGAAAAACTGACTGCTGAAGGCGTGAAAGCGCGCGTGGTGTCCATGCCGTCTACCGA
CGCATTCGACAAGCAGGACGCGGCTTATCGTGAGTCTGTCCTGCCGAAAGCTGTTACTGCACGCGTTGCGGTGGAAGCGG
GTATTGCTGACTACTGGTACAAGTATGTTGGTCTGAATGGCGCTATCATCGGTATGACCACCTTCGGTGAGTCAGCTCCG
GCAGAGTTGCTGTTCGAAGAGTTCGGCTTCACCGTCGACAACGTCGTTGCGAAAGCAAAAGAACTGCTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(540-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.176

99.246

0.478