Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MYF75_RS09155 Genome accession   NZ_CP096834
Coordinates   1520379..1520984 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain PM4-5     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1515379..1525984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF75_RS09135 (MYF75_09135) aes 1515416..1516375 (+) 960 WP_000801846.1 acetyl esterase -
  MYF75_RS09140 (MYF75_09140) hemH 1516372..1517334 (-) 963 WP_001250088.1 ferrochelatase -
  MYF75_RS09145 (MYF75_09145) adk 1517570..1518214 (-) 645 WP_001220233.1 adenylate kinase -
  MYF75_RS09150 (MYF75_09150) htpG 1518395..1520269 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  MYF75_RS09155 (MYF75_09155) recR 1520379..1520984 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  MYF75_RS09160 (MYF75_09160) ybaB 1520984..1521313 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  MYF75_RS09165 (MYF75_09165) dnaX 1521366..1523297 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  MYF75_RS09170 (MYF75_09170) apt 1523426..1523977 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  MYF75_RS09175 (MYF75_09175) ybaN 1524130..1524507 (-) 378 WP_001188905.1 DUF454 family protein -
  MYF75_RS09180 (MYF75_09180) priC 1524577..1525104 (+) 528 WP_097311389.1 primosomal replication protein N'' -
  MYF75_RS09185 (MYF75_09185) rsmS 1525118..1525279 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  MYF75_RS25850 - 1525332..1525430 (-) 99 Protein_1491 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=590856 MYF75_RS09155 WP_001195025.1 1520379..1520984(-) (recR) [Escherichia coli strain PM4-5]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=590856 MYF75_RS09155 WP_001195025.1 1520379..1520984(-) (recR) [Escherichia coli strain PM4-5]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443