Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   M1V28_RS27460 Genome accession   NZ_CP096822
Coordinates   5960174..5960770 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain NY8709     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5955174..5965770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1V28_RS27440 (M1V28_27395) aroK 5956305..5956823 (-) 519 WP_003095833.1 shikimate kinase AroK -
  M1V28_RS27445 (M1V28_27400) pilQ 5956835..5958979 (-) 2145 WP_019726987.1 type 4a pilus secretin PilQ Machinery gene
  M1V28_RS27450 (M1V28_27405) comL/pilP 5959033..5959557 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  M1V28_RS27455 (M1V28_27410) pilO 5959554..5960177 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  M1V28_RS27460 (M1V28_27415) pilN 5960174..5960770 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  M1V28_RS27465 (M1V28_27420) pilM 5960770..5961834 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  M1V28_RS27470 (M1V28_27425) - 5962019..5964490 (+) 2472 WP_019726988.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=590824 M1V28_RS27460 WP_003095839.1 5960174..5960770(-) (pilN) [Pseudomonas aeruginosa strain NY8709]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=590824 M1V28_RS27460 WP_003095839.1 5960174..5960770(-) (pilN) [Pseudomonas aeruginosa strain NY8709]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369