Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   M1V28_RS27450 Genome accession   NZ_CP096822
Coordinates   5959033..5959557 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NY8709     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5954033..5964557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1V28_RS27435 (M1V28_27390) aroB 5955149..5956255 (-) 1107 WP_019726985.1 3-dehydroquinate synthase -
  M1V28_RS27440 (M1V28_27395) aroK 5956305..5956823 (-) 519 WP_003095833.1 shikimate kinase AroK -
  M1V28_RS27445 (M1V28_27400) pilQ 5956835..5958979 (-) 2145 WP_019726987.1 type 4a pilus secretin PilQ Machinery gene
  M1V28_RS27450 (M1V28_27405) comL/pilP 5959033..5959557 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  M1V28_RS27455 (M1V28_27410) pilO 5959554..5960177 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  M1V28_RS27460 (M1V28_27415) pilN 5960174..5960770 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  M1V28_RS27465 (M1V28_27420) pilM 5960770..5961834 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  M1V28_RS27470 (M1V28_27425) - 5962019..5964490 (+) 2472 WP_019726988.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=590822 M1V28_RS27450 WP_003095836.1 5959033..5959557(-) (comL/pilP) [Pseudomonas aeruginosa strain NY8709]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=590822 M1V28_RS27450 WP_003095836.1 5959033..5959557(-) (comL/pilP) [Pseudomonas aeruginosa strain NY8709]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362