Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KZP24_RS20285 Genome accession   NZ_CP080028
Coordinates   3954576..3956393 (+) Length   605 a.a.
NCBI ID   WP_078110301.1    Uniprot ID   A0A8E2I7J5
Organism   Heyndrickxia oleronia strain DSM 9356     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3949576..3961393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZP24_RS20260 - 3950478..3951050 (+) 573 WP_058004814.1 GNAT family N-acetyltransferase -
  KZP24_RS20265 spxA 3951398..3951794 (+) 397 Protein_3874 transcriptional regulator SpxA -
  KZP24_RS20270 mecA 3952497..3953153 (+) 657 WP_058004816.1 adaptor protein MecA -
  KZP24_RS20275 - 3953303..3954307 (+) 1005 WP_260838810.1 competence protein CoiA -
  KZP24_RS20280 - 3954331..3954489 (+) 159 WP_260838811.1 hypothetical protein -
  KZP24_RS20285 pepF 3954576..3956393 (+) 1818 WP_078110301.1 oligoendopeptidase F Regulator
  KZP24_RS20290 - 3957307..3958179 (-) 873 WP_058004819.1 ClpXP adapter SpxH family protein -
  KZP24_RS20295 - 3958176..3958577 (-) 402 WP_058004820.1 globin -
  KZP24_RS20300 - 3958756..3959397 (-) 642 WP_058004821.1 lytic transglycosylase domain-containing protein -
  KZP24_RS20305 - 3959521..3960092 (-) 572 Protein_3882 CYTH domain-containing protein -
  KZP24_RS20310 - 3960240..3960890 (+) 651 WP_058004823.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69537.89 Da        Isoelectric Point: 4.7002

>NTDB_id=590817 KZP24_RS20285 WP_078110301.1 3954576..3956393(+) (pepF) [Heyndrickxia oleronia strain DSM 9356]
MTNTTTKSLPSRNEVQEELTWRLEDIFANDEAWDKEYKEVKELLPSAEQFKGKLGDNAEKLFEALTFQDEVAERLGKLYA
YSHMRSDQDTTNSFYQGLDSRMNSLLAEMGSAFAYLVPEILSIDEDKLASFLNEKSELQVYKHALEQINLQRPHVLSADQ
EALLAQAAEVMNASSNTFGMLNNADLEFPTIKDENGEEVQITHGRYTRFLESADQRVRKEAFEKLYETYGNFKNTFASTL
GGQVKRDNFNAKVRNYQSAREAALSNNNIPESVYDNLVNTVNKNLHLLHKYVKLRKKVLGVDELHMYDLYTPLVKDVEMK
VTYEEAKEMVLKGLAPLGEEYQEILKEGFENRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHSV
HSYYTRKNQPYTYGDYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKEQN
GEALTAEMLTKEYYELNKKYFGGDDIVIDEQIGLEWSRIPHFYYNYYVYQYATGFSAATALSAQILEEGKPAVERYIKNF
LSAGSSDYPIEVLKKAGVDMTSSQPIEAALKVFEEKLNELESLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=590817 KZP24_RS20285 WP_078110301.1 3954576..3956393(+) (pepF) [Heyndrickxia oleronia strain DSM 9356]
ATGACTAATACAACAACAAAATCACTACCAAGCCGAAATGAGGTTCAGGAAGAGCTAACTTGGAGATTAGAAGATATTTT
TGCCAATGATGAAGCTTGGGATAAGGAATATAAAGAAGTAAAAGAATTATTACCAAGTGCAGAGCAGTTTAAGGGGAAAC
TAGGAGATAATGCAGAGAAACTTTTCGAAGCATTAACTTTTCAAGATGAGGTTGCTGAAAGATTAGGCAAGTTATATGCA
TACTCTCATATGCGTAGTGACCAAGATACTACCAATTCATTTTATCAAGGTTTAGATAGCCGCATGAATAGTCTCCTTGC
AGAAATGGGGAGCGCATTTGCTTACTTAGTTCCAGAGATTTTATCTATTGATGAGGATAAATTAGCAAGTTTTCTAAATG
AAAAAAGTGAATTACAAGTGTACAAACATGCACTTGAACAAATTAATCTCCAAAGACCACATGTATTATCAGCAGATCAA
GAAGCATTATTGGCACAAGCAGCAGAAGTGATGAATGCTTCTAGTAATACGTTTGGTATGTTAAATAATGCGGATCTTGA
ATTTCCAACCATTAAAGATGAGAATGGCGAAGAAGTGCAAATCACACATGGTCGTTATACTCGTTTCTTAGAAAGTGCTG
ATCAACGTGTTCGTAAAGAAGCATTTGAAAAGCTATATGAAACATACGGTAATTTCAAAAATACATTTGCTAGTACATTA
GGTGGTCAAGTAAAACGAGATAACTTCAATGCAAAAGTAAGAAATTATCAATCTGCACGTGAAGCGGCATTATCAAATAA
TAATATACCTGAAAGTGTTTATGATAATCTGGTGAATACCGTTAACAAGAATCTTCATCTTTTACATAAGTATGTGAAGC
TGCGTAAAAAGGTATTAGGTGTTGATGAACTACATATGTATGATTTGTATACACCTCTTGTTAAAGATGTAGAAATGAAA
GTAACATATGAAGAAGCAAAAGAAATGGTTTTAAAAGGTCTTGCCCCATTAGGTGAAGAATATCAAGAGATCTTAAAAGA
AGGCTTTGAAAATCGATGGGTTGATGTGGTTGAAAATAAGGGGAAACGGAGTGGTGCCTATTCATCCGGAGCATATGGAA
CAAATCCTTATATTTTGATGAACTGGCAGGACAATGTGAATAATCTTTTTACCTTAGCACATGAATTTGGTCACAGTGTT
CATAGTTATTACACAAGAAAAAATCAGCCATATACGTATGGGGATTACTCAATTTTTGTTGCTGAAGTGGCTTCTACATG
TAATGAAGCTTTACTAAATGATTATTTATTAAAAACGATTGATGATGAGCAAAAGAGAATTTATTTACTTAATCATTACC
TAGAAGGCTTCAGAGGTACAGTTTTCCGCCAAACGATGTTTGCAGAGTTTGAACATTTAATCCATCAAAAAGAACAAAAT
GGAGAAGCATTAACTGCCGAAATGCTAACGAAAGAATATTATGAGCTGAATAAAAAATATTTCGGTGGAGATGATATTGT
AATTGATGAACAAATAGGATTAGAATGGTCACGAATTCCACATTTCTACTACAATTATTACGTTTATCAATATGCAACAG
GTTTTAGTGCTGCAACTGCATTAAGTGCTCAAATTCTTGAAGAAGGGAAACCTGCGGTTGAACGTTATATTAAGAATTTC
TTATCTGCGGGTAGTTCAGATTATCCAATTGAAGTGCTAAAGAAAGCAGGCGTGGATATGACTTCTTCACAACCAATTGA
AGCAGCATTGAAGGTGTTTGAAGAAAAACTTAATGAGCTTGAAAGCTTATTATCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(119-188)

Peptidase family M3 (Peptidase_M3)

(210-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

98.512

0.491