Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KZP24_RS17700 Genome accession   NZ_CP080028
Coordinates   3453114..3453908 (+) Length   264 a.a.
NCBI ID   WP_071977659.1    Uniprot ID   A0A8E2IBY9
Organism   Heyndrickxia oleronia strain DSM 9356     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3454351..3455925 3453114..3453908 flank 443


Gene organization within MGE regions


Location: 3453114..3455925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZP24_RS17700 recX 3453114..3453908 (+) 795 WP_071977659.1 recombination regulator RecX Regulator
  KZP24_RS17705 - 3453927..3454250 (+) 324 WP_058005671.1 YfhH family protein -
  KZP24_RS17710 - 3454351..3455925 (-) 1575 WP_071977791.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31333.92 Da        Isoelectric Point: 7.4536

>NTDB_id=590807 KZP24_RS17700 WP_071977659.1 3453114..3453908(+) (recX) [Heyndrickxia oleronia strain DSM 9356]
MPIITKISVQKNNVERYNIFLDGNYSFSVDEEVLARFQLMKGKELSELDITEINYEDEIRKGVNSAIHYLSFRMRSEREV
RDYLKQKEYPEPAIQEVIHKLYQLKYINDVEFAIAFVRTQVNTTKKGPSVLKRELKEKGISETNIDIAMKEYPMDAQLSH
ATALIEKTIKQNQKLSERSLKQKIEQNLLRKGFSGEMIQMAMNEVTIEKDEDQEWHAMIEQGMKAHRKFQKYSGYEYEQK
MKQTLYRKGFSIELIDRFINEYEK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=590807 KZP24_RS17700 WP_071977659.1 3453114..3453908(+) (recX) [Heyndrickxia oleronia strain DSM 9356]
ATGCCAATTATTACGAAAATATCCGTACAAAAGAATAATGTTGAACGGTATAATATCTTTCTTGATGGGAACTACTCCTT
TAGTGTGGATGAAGAAGTATTAGCACGATTTCAGTTAATGAAGGGGAAGGAACTATCTGAATTAGATATTACTGAAATCA
ACTATGAGGATGAGATCCGTAAGGGTGTTAATAGTGCCATACATTATCTTTCCTTTCGCATGCGTTCTGAAAGGGAAGTT
AGGGATTATTTAAAGCAAAAAGAATATCCTGAACCTGCGATTCAAGAAGTTATCCATAAATTATATCAATTGAAATATAT
AAATGATGTAGAGTTTGCTATTGCCTTTGTTCGAACACAAGTCAATACAACGAAAAAAGGGCCAAGTGTTTTAAAACGGG
AGTTAAAGGAGAAGGGGATTTCTGAAACGAATATTGACATAGCGATGAAGGAATATCCAATGGATGCTCAGCTTTCCCAT
GCGACAGCACTGATTGAAAAAACAATCAAGCAGAACCAGAAGCTTTCCGAGAGAAGTTTAAAGCAAAAAATTGAACAGAA
TTTACTGAGAAAAGGTTTTTCGGGAGAAATGATCCAAATGGCCATGAATGAGGTAACAATCGAAAAGGATGAGGATCAGG
AATGGCATGCGATGATTGAGCAAGGAATGAAGGCGCATCGGAAATTCCAAAAGTATAGTGGCTATGAGTATGAGCAAAAA
ATGAAACAGACCTTATATCGAAAAGGATTTTCAATCGAATTAATCGACCGATTTATCAATGAATATGAAAAGTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

50.19

99.621

0.5