Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   M1V28_RS10080 Genome accession   NZ_CP096822
Coordinates   2160448..2161062 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain NY8709     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2155448..2166062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1V28_RS10055 (M1V28_10040) - 2155905..2156168 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  M1V28_RS10060 (M1V28_10045) topA 2156259..2158865 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  M1V28_RS10065 (M1V28_10050) - 2158972..2159490 (+) 519 WP_003113979.1 DUF6586 family protein -
  M1V28_RS10070 (M1V28_10055) - 2159696..2159929 (+) 234 WP_003109483.1 hypothetical protein -
  M1V28_RS10075 (M1V28_10060) sulA 2159951..2160436 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  M1V28_RS10080 (M1V28_10065) dinR/lexA 2160448..2161062 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  M1V28_RS10085 (M1V28_10070) psrA 2161294..2161995 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  M1V28_RS10090 (M1V28_10075) nagZ 2162197..2163195 (+) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  M1V28_RS10095 (M1V28_10080) - 2163207..2163944 (+) 738 WP_003122475.1 S-methyl-5'-thioinosine phosphorylase -
  M1V28_RS10100 (M1V28_10085) - 2163990..2164619 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=590772 M1V28_RS10080 WP_003091196.1 2160448..2161062(-) (dinR/lexA) [Pseudomonas aeruginosa strain NY8709]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=590772 M1V28_RS10080 WP_003091196.1 2160448..2161062(-) (dinR/lexA) [Pseudomonas aeruginosa strain NY8709]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCACGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387