Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   M1V28_RS02105 Genome accession   NZ_CP096822
Coordinates   455640..456005 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain NY8709     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450640..461005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1V28_RS02075 (M1V28_02075) pyrR 451262..451774 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  M1V28_RS02080 (M1V28_02080) ruvX 451886..452320 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  M1V28_RS02085 (M1V28_02085) - 452320..452889 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  M1V28_RS02090 (M1V28_02090) - 452938..453831 (-) 894 WP_003084580.1 TonB family protein -
  M1V28_RS02095 (M1V28_02095) gshB 453978..454931 (-) 954 WP_003100943.1 glutathione synthase -
  M1V28_RS02100 (M1V28_02100) pilG 455186..455593 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  M1V28_RS02105 (M1V28_02105) pilH 455640..456005 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  M1V28_RS02110 (M1V28_02110) - 456056..456592 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  M1V28_RS02115 (M1V28_02115) pilJ 456677..458725 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  M1V28_RS02120 (M1V28_02120) pilK 458786..459661 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=590751 M1V28_RS02105 WP_003084587.1 455640..456005(+) (pilH) [Pseudomonas aeruginosa strain NY8709]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=590751 M1V28_RS02105 WP_003084587.1 455640..456005(+) (pilH) [Pseudomonas aeruginosa strain NY8709]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364