Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   M1V28_RS00125 Genome accession   NZ_CP096822
Coordinates   28518..29543 (+) Length   341 a.a.
NCBI ID   WP_019725668.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY8709     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 23518..34543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1V28_RS00100 (M1V28_00100) - 23706..24023 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  M1V28_RS00105 (M1V28_00105) trkA 24172..25545 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  M1V28_RS00110 (M1V28_00110) rsmB 25573..26877 (-) 1305 WP_016561456.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  M1V28_RS00115 (M1V28_00115) fmt 26874..27818 (-) 945 WP_019725667.1 methionyl-tRNA formyltransferase -
  M1V28_RS00120 (M1V28_00120) def 27873..28379 (-) 507 WP_003107059.1 peptide deformylase -
  M1V28_RS00125 (M1V28_00125) tsaP 28518..29543 (+) 1026 WP_019725668.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  M1V28_RS00130 (M1V28_00130) dprA 29678..30766 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  M1V28_RS00135 (M1V28_00135) - 30807..31364 (+) 558 WP_016561457.1 L-threonylcarbamoyladenylate synthase -
  M1V28_RS00140 (M1V28_00140) - 31374..32351 (-) 978 WP_016561458.1 NADPH:quinone reductase -
  M1V28_RS00145 (M1V28_00145) hemF 32542..33459 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  M1V28_RS00150 (M1V28_00150) aroE 33517..34341 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37555.98 Da        Isoelectric Point: 9.3358

>NTDB_id=590744 M1V28_RS00125 WP_019725668.1 28518..29543(+) (tsaP) [Pseudomonas aeruginosa strain NY8709]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDALSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=590744 M1V28_RS00125 WP_019725668.1 28518..29543(+) (tsaP) [Pseudomonas aeruginosa strain NY8709]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACGCCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393