Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KYI13_RS11780 Genome accession   NZ_CP079984
Coordinates   2227816..2229177 (-) Length   453 a.a.
NCBI ID   WP_096077851.1    Uniprot ID   A0A2G5NU81
Organism   Macrococcoides bohemicum strain 19Msa0383     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2222816..2234177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYI13_RS11755 (KYI13_11760) cysE 2223241..2223882 (-) 642 WP_096077856.1 serine O-acetyltransferase -
  KYI13_RS11760 (KYI13_11765) gltX 2224131..2225585 (-) 1455 WP_203546580.1 glutamate--tRNA ligase -
  KYI13_RS11765 (KYI13_11770) ispF 2225596..2226078 (-) 483 WP_203545869.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  KYI13_RS11770 (KYI13_11775) ispD 2226075..2226746 (-) 672 WP_331463567.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KYI13_RS11775 (KYI13_11780) - 2226748..2227803 (-) 1056 WP_096077852.1 PIN/TRAM domain-containing protein -
  KYI13_RS11780 (KYI13_11785) radA 2227816..2229177 (-) 1362 WP_096077851.1 DNA repair protein RadA Machinery gene
  KYI13_RS11785 (KYI13_11790) - 2229330..2231753 (-) 2424 WP_096077850.1 ATP-dependent Clp protease ATP-binding subunit -
  KYI13_RS11790 (KYI13_11795) - 2231766..2232776 (-) 1011 WP_219497824.1 protein arginine kinase -
  KYI13_RS11795 (KYI13_11800) - 2232766..2233158 (-) 393 WP_219497826.1 UvrB/UvrC motif-containing protein -
  KYI13_RS11800 (KYI13_11805) - 2233170..2233631 (-) 462 WP_203545871.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50248.92 Da        Isoelectric Point: 7.4857

>NTDB_id=590627 KYI13_RS11780 WP_096077851.1 2227816..2229177(-) (radA) [Macrococcoides bohemicum strain 19Msa0383]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKTAIHQQDSNSKVEKLKNITKESVPRDHTQMGELDR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVCAMLSQRHPVLYISGEESVRQTKLRADRLKEDAGELDVYAETNLQIIHETV
KKMQPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMRNTGLTEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVSPTSFHNP
RRMATGIDHNRLTLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSIIISIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVIGVTNISEALKLAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=590627 KYI13_RS11780 WP_096077851.1 2227816..2229177(-) (radA) [Macrococcoides bohemicum strain 19Msa0383]
TTGGCTAAAGTGAAATCAACTTTTGAATGTATGGCCTGTGGTTATCAGTCCCCAAAATGGATGGGTAAATGTCCGAATTG
TGGCGCCTGGAATCAGATGGAAGAAGTCATCGAACATAAACAAAAAGGACCAAAAACAGCAATACATCAGCAAGATTCAA
ATTCTAAAGTAGAAAAATTAAAAAATATAACGAAAGAAAGTGTGCCAAGAGACCATACGCAAATGGGAGAACTTGACCGT
GTATTAGGTGGCGGTATTGTTCCTGGCTCACTCGTGCTCATTGGTGGAGATCCAGGTATCGGAAAGTCAACATTGTTACT
ACAAGTGTGTGCGATGTTGTCACAACGTCATCCCGTACTTTATATATCAGGTGAGGAATCGGTAAGACAAACAAAACTCC
GTGCAGACCGCTTAAAGGAAGATGCTGGAGAGTTAGATGTGTATGCGGAGACAAATCTTCAAATCATACATGAAACCGTG
AAGAAGATGCAGCCGAAGTTTTTAGTGATTGACTCTATTCAAACGATTTTTCATCCGGAAGTAACGAGCGCACCAGGTTC
AGTATCTCAAGTGCGTGAATGTACGCAGGAGTTAATGCGTATTGCAAAGCAGATGAATATTGCGACGTTTATCGTCGGTC
ACGTTACAAAAGAAGGGCAAATCGCAGGACCACGTTTACTTGAACATATGGTAGATACTGTACTTTATTTTGAAGGCGAT
ACACATCATAGTTACCGTATTTTACGTGCCGTGAAAAACCGTTTCGGTTCTACAAATGAAATGGGTATATTTGAAATGCG
CAATACTGGCCTTACAGAAGTATTAAACCCGAGTGAAATGTTCTTAGAAGAACGTACGAAGAATGTAGCAGGTTCTACGA
TTGTTGCCACAATGGAAGGCACGCGTCCACTCCTCGTTGAAGTTCAATCATTAGTGTCACCGACATCATTTCATAACCCT
AGACGTATGGCGACAGGTATTGACCATAACCGTTTAACACTGTTAATGGCAGTACTAGAGAAGAAACAAGGTTATCTGTT
ACAGCAACAGGATGCCTATGTCAAAGTAGCAGGTGGCGTGAAATTAGATGAACCTGCTGTTGATTTAAGTATTATTATTA
GCATTGCTTCAAGCTATAATGATAAACCAACCCGTGGCGATGACTGCTTTATCGGAGAAGTAGGTTTGACTGGAGAAGTA
AGACGTGTTGCGCGTATTGAACAACGTGTGCAGGAAGCTGAAAAACTTGGATTCAAACGTGTCATTATTCCGAAGAATAA
TATCGGTGGCTGGGATTTCCCGGGGAATATCGAAGTGATTGGTGTAACAAATATAAGCGAAGCATTAAAGCTTGCATTTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G5NU81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.202

100

0.687
  radA Streptococcus pneumoniae Rx1

62.031

100

0.62
  radA Streptococcus pneumoniae D39

62.031

100

0.62
  radA Streptococcus pneumoniae R6

62.031

100

0.62
  radA Streptococcus pneumoniae TIGR4

62.031

100

0.62
  radA Streptococcus mitis NCTC 12261

62.031

100

0.62
  radA Streptococcus mitis SK321

62.031

100

0.62