NTDB

Overview

Name	ceuB	Type	Machinery gene
Locus tag	KYI13_RS11530	Genome accession	NZ_CP079984
Coordinates	2180723..2181676 (-)	Length	317 a.a.
NCBI ID	WP_096077898.1	Uniprot ID	A0A4V3B1E1
Organism	Macrococcoides bohemicum strain 19Msa0383
Function	DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2175723..2186676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KYI13_RS11505 (KYI13_11510)	hemQ	2176012..2176761 (+)	750	WP_096077903.1	hydrogen peroxide-dependent heme synthase	-
KYI13_RS11510 (KYI13_11515)	-	2177103..2177633 (-)	531	WP_096077902.1	hypothetical protein	-
KYI13_RS11515 (KYI13_11520)	-	2177845..2178882 (-)	1038	WP_096077901.1	ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD	-
KYI13_RS11520 (KYI13_11525)	-	2178978..2179784 (-)	807	WP_096077900.1	ABC transporter ATP-binding protein	-
KYI13_RS11525 (KYI13_11530)	-	2179777..2180730 (-)	954	WP_096077899.1	iron chelate uptake ABC transporter family permease subunit	-
KYI13_RS11530 (KYI13_11535)	ceuB	2180723..2181676 (-)	954	WP_096077898.1	ABC transporter permease	Machinery gene
KYI13_RS11535 (KYI13_11540)	-	2181877..2183226 (+)	1350	WP_133354217.1	APC family permease	-
KYI13_RS13205	-	2183294..2183419 (+)	126	WP_257790030.1	hypothetical protein	-
KYI13_RS11540 (KYI13_11545)	-	2183595..2184893 (+)	1299	WP_414739382.1	IS1182 family transposase	-
KYI13_RS11545 (KYI13_11550)	-	2185018..2185380 (-)	363	WP_203545854.1	DUF423 domain-containing protein	-
KYI13_RS11550 (KYI13_11555)	-	2185399..2185707 (-)	309	WP_096077895.1	DUF5327 family protein	-
KYI13_RS11555 (KYI13_11560)	-	2185704..2186363 (-)	660	WP_203545855.1	uracil-DNA glycosylase	-

Sequence

Protein

Download Length: 317 a.a. Molecular weight: 34909.52 Da Isoelectric Point: 10.4858

                                >NTDB_id=590626 KYI13_RS11530 WP_096077898.1 2180723..2181676(-) (ceuB) [Macrococcoides bohemicum strain 19Msa0383]

MKMMYGLIALVLLSIVSIFVGVIDISPQHLMHLSDNQKNILMNSRFPRTLSIILAGVALSVAGLLMQQLTRNKFVSPTTA

GTMDFAKFGVLISMIFFAQAPLLVKLGFSITTAILGTFMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAM

QSISNFFVGDFSMITKGRYEVLYIIIPMVIIMYFFAHHFTIVGMGESFSKNLGISYNKIMNLGVVIAAVVSATVVVTIGV

LPFLGLIVPNIVGLFVGDHMNKALPYTALLGAIIVMIADIFSRIIIFPYEIPIGLTLGILGSVVFMIILLKRRKEYA

Nucleotide

Download Length: 954 bp

                                >NTDB_id=590626 KYI13_RS11530 WP_096077898.1 2180723..2181676(-) (ceuB) [Macrococcoides bohemicum strain 19Msa0383]

ATGAAAATGATGTATGGTCTTATCGCATTAGTATTATTATCGATTGTTTCGATATTTGTAGGGGTGATTGATATTTCGCC

GCAACATTTAATGCATCTATCAGACAATCAGAAGAATATTTTAATGAATAGTCGTTTCCCGAGGACGCTATCTATCATAT

TGGCAGGTGTGGCATTAAGTGTTGCAGGGTTACTGATGCAGCAGCTTACACGTAATAAATTCGTCTCGCCGACGACAGCA

GGTACAATGGATTTTGCGAAGTTTGGTGTATTGATATCAATGATTTTCTTTGCGCAAGCGCCGCTATTAGTAAAACTTGG

ATTTAGTATTACAACTGCTATTCTCGGAACATTTATGTTTATGTGGATTGTTAATCGTATTAAGTTTAAAGATGCGATAT

TCATTCCGCTTGTCGGATTGATGCTGGGTAATATCGTTTCCAGCTTAGCAACATTTATGGCATTAAGATTTAATGCAATG

CAAAGTATTTCTAACTTCTTTGTCGGTGATTTTTCGATGATTACGAAAGGACGTTATGAAGTGCTGTATATCATCATTCC

GATGGTTATTATTATGTACTTCTTTGCACATCACTTTACGATTGTCGGAATGGGAGAGTCGTTTAGTAAGAACTTAGGTA

TTTCATACAATAAGATAATGAATCTCGGCGTAGTTATTGCGGCAGTTGTTTCAGCCACTGTCGTCGTAACAATCGGTGTA

TTACCATTCCTGGGATTGATTGTACCGAATATTGTTGGGCTTTTTGTCGGGGATCATATGAATAAAGCGTTACCGTACAC

TGCGCTTCTTGGAGCGATTATTGTAATGATTGCTGATATATTCAGCCGAATTATTATCTTTCCATACGAAATACCGATAG

GGCTAACGCTAGGTATTTTAGGGAGTGTTGTATTTATGATTATCCTTCTGAAAAGGAGGAAAGAATATGCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A4V3B1E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ceuB	Campylobacter jejuni subsp. jejuni 81-176	49.679	98.423	0.489

Detailed information NTG0590626