Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KYI11_RS12010 Genome accession   NZ_CP079981
Coordinates   2268187..2269548 (-) Length   453 a.a.
NCBI ID   WP_219503122.1    Uniprot ID   A0AAJ4PAV7
Organism   Macrococcoides bohemicum strain 19Msa0936     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2263187..2274548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYI11_RS11985 (KYI11_11995) cysE 2263612..2264253 (-) 642 WP_096077856.1 serine O-acetyltransferase -
  KYI11_RS11990 (KYI11_12000) gltX 2264502..2265956 (-) 1455 WP_199798157.1 glutamate--tRNA ligase -
  KYI11_RS11995 (KYI11_12005) ispF 2265967..2266449 (-) 483 WP_111746614.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  KYI11_RS12000 (KYI11_12010) ispD 2266446..2267117 (-) 672 WP_331463558.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KYI11_RS12005 (KYI11_12015) - 2267119..2268174 (-) 1056 WP_096077852.1 PIN/TRAM domain-containing protein -
  KYI11_RS12010 (KYI11_12020) radA 2268187..2269548 (-) 1362 WP_219503122.1 DNA repair protein RadA Machinery gene
  KYI11_RS12015 (KYI11_12025) - 2269701..2272124 (-) 2424 WP_133354255.1 ATP-dependent Clp protease ATP-binding subunit -
  KYI11_RS12020 (KYI11_12030) - 2272137..2273147 (-) 1011 WP_096077849.1 protein arginine kinase -
  KYI11_RS12025 (KYI11_12035) - 2273137..2273529 (-) 393 WP_096077848.1 UvrB/UvrC motif-containing protein -
  KYI11_RS12030 (KYI11_12040) - 2273541..2274002 (-) 462 WP_203545871.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50260.97 Da        Isoelectric Point: 7.4857

>NTDB_id=590595 KYI11_RS12010 WP_219503122.1 2268187..2269548(-) (radA) [Macrococcoides bohemicum strain 19Msa0936]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKTAIHQQDSNSKVEKLKNITKESVPRDHTQMGELDR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVCAMLSQRHPVLYISGEESVRQTKLRADRLKEDAGELDVYAETNLQIIHETV
KKMQPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMRNTGLIEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVSPTSFHNP
RRMATGIDHNRLTLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSIIISIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVIGVTNISEALKLAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=590595 KYI11_RS12010 WP_219503122.1 2268187..2269548(-) (radA) [Macrococcoides bohemicum strain 19Msa0936]
TTGGCTAAAGTGAAATCAACTTTTGAATGTATGGCCTGTGGTTATCAGTCCCCAAAATGGATGGGTAAATGTCCGAATTG
TGGCGCCTGGAATCAGATGGAAGAAGTCATTGAACATAAACAAAAAGGACCAAAAACAGCAATACATCAGCAAGATTCAA
ATTCTAAAGTAGAAAAATTAAAAAATATAACGAAAGAAAGTGTGCCAAGAGACCATACGCAAATGGGAGAACTTGACCGT
GTATTAGGTGGCGGTATTGTTCCTGGCTCACTCGTGCTCATTGGTGGAGATCCAGGTATCGGAAAGTCAACATTGTTACT
ACAAGTGTGTGCGATGTTGTCACAACGTCATCCCGTACTTTATATATCAGGTGAGGAATCGGTAAGACAAACAAAACTCC
GTGCAGACCGCTTAAAGGAAGATGCCGGAGAGTTAGATGTGTATGCGGAGACAAATCTTCAAATCATACATGAAACCGTG
AAGAAGATGCAGCCGAAGTTTTTAGTGATTGACTCTATTCAAACGATTTTTCATCCGGAAGTAACGAGCGCACCAGGTTC
AGTATCTCAAGTGCGTGAATGTACGCAGGAGTTAATGCGTATTGCAAAGCAGATGAATATTGCGACGTTTATCGTCGGTC
ACGTTACAAAAGAAGGGCAAATCGCAGGACCACGTTTACTTGAACATATGGTAGATACTGTACTTTATTTTGAAGGCGAT
ACACATCATAGTTACCGTATTTTACGTGCCGTGAAAAACCGTTTCGGTTCTACAAATGAAATGGGTATATTTGAAATGCG
CAATACTGGCCTTATAGAAGTATTAAACCCGAGTGAAATGTTCTTAGAAGAACGTACGAAGAATGTAGCCGGTTCTACGA
TTGTTGCCACAATGGAAGGCACGCGTCCACTCCTTGTTGAAGTTCAATCATTAGTGTCACCGACATCATTTCATAACCCT
AGACGTATGGCGACAGGTATTGACCATAACCGTTTAACACTGTTAATGGCAGTACTAGAGAAGAAACAAGGTTATCTGTT
ACAGCAACAGGATGCCTATGTCAAAGTAGCAGGTGGCGTGAAATTAGATGAACCTGCTGTTGATTTAAGTATTATTATTA
GCATTGCTTCAAGCTATAATGATAAACCAACCCGTGGCGATGACTGCTTTATCGGAGAAGTAGGTTTGACTGGAGAAGTA
AGACGTGTTGCGCGTATTGAACAACGTGTGCAGGAAGCTGAAAAACTTGGATTCAAACGTGTCATTATTCCAAAGAATAA
TATCGGTGGCTGGGATTTCCCGGGGAATATCGAAGTGATTGGTGTAACAAATATAAGCGAAGCATTAAAGCTTGCATTTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.982

100

0.684
  radA Streptococcus pneumoniae Rx1

62.031

100

0.62
  radA Streptococcus pneumoniae D39

62.031

100

0.62
  radA Streptococcus pneumoniae R6

62.031

100

0.62
  radA Streptococcus pneumoniae TIGR4

62.031

100

0.62
  radA Streptococcus mitis SK321

62.031

100

0.62
  radA Streptococcus mitis NCTC 12261

62.031

100

0.62