Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   KYI11_RS11765 Genome accession   NZ_CP079981
Coordinates   2222656..2223609 (-) Length   317 a.a.
NCBI ID   WP_096077898.1    Uniprot ID   A0A4V3B1E1
Organism   Macrococcoides bohemicum strain 19Msa0936     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2217656..2228609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYI11_RS11740 (KYI11_11750) hemQ 2218067..2218816 (+) 750 WP_096077903.1 hydrogen peroxide-dependent heme synthase -
  KYI11_RS11745 (KYI11_11755) - 2219036..2219566 (-) 531 WP_219503087.1 hypothetical protein -
  KYI11_RS11750 (KYI11_11760) - 2219778..2220815 (-) 1038 WP_096077901.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  KYI11_RS11755 (KYI11_11765) - 2220911..2221717 (-) 807 WP_096077900.1 ABC transporter ATP-binding protein -
  KYI11_RS11760 (KYI11_11770) - 2221710..2222663 (-) 954 WP_096077899.1 iron chelate uptake ABC transporter family permease subunit -
  KYI11_RS11765 (KYI11_11775) ceuB 2222656..2223609 (-) 954 WP_096077898.1 ABC transporter permease Machinery gene
  KYI11_RS11770 (KYI11_11780) - 2223809..2225158 (+) 1350 WP_133354217.1 APC family permease -
  KYI11_RS12825 - 2225225..2225350 (+) 126 WP_257790030.1 hypothetical protein -
  KYI11_RS11775 (KYI11_11785) - 2225389..2225751 (-) 363 WP_133354219.1 DUF423 domain-containing protein -
  KYI11_RS11780 (KYI11_11790) - 2225770..2226078 (-) 309 WP_219503090.1 DUF5327 family protein -
  KYI11_RS11785 (KYI11_11795) - 2226075..2226734 (-) 660 WP_133354223.1 uracil-DNA glycosylase -
  KYI11_RS11790 (KYI11_11800) thiD 2226841..2227671 (+) 831 WP_096077893.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KYI11_RS11795 (KYI11_11805) - 2227796..2228152 (+) 357 WP_096077892.1 YojF family protein -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 34909.52 Da        Isoelectric Point: 10.4858

>NTDB_id=590594 KYI11_RS11765 WP_096077898.1 2222656..2223609(-) (ceuB) [Macrococcoides bohemicum strain 19Msa0936]
MKMMYGLIALVLLSIVSIFVGVIDISPQHLMHLSDNQKNILMNSRFPRTLSIILAGVALSVAGLLMQQLTRNKFVSPTTA
GTMDFAKFGVLISMIFFAQAPLLVKLGFSITTAILGTFMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAM
QSISNFFVGDFSMITKGRYEVLYIIIPMVIIMYFFAHHFTIVGMGESFSKNLGISYNKIMNLGVVIAAVVSATVVVTIGV
LPFLGLIVPNIVGLFVGDHMNKALPYTALLGAIIVMIADIFSRIIIFPYEIPIGLTLGILGSVVFMIILLKRRKEYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=590594 KYI11_RS11765 WP_096077898.1 2222656..2223609(-) (ceuB) [Macrococcoides bohemicum strain 19Msa0936]
ATGAAAATGATGTATGGTCTTATCGCATTAGTATTATTATCGATTGTTTCGATATTTGTAGGGGTGATTGATATTTCGCC
GCAACATTTAATGCATCTATCAGACAATCAGAAGAATATTTTAATGAATAGTCGTTTCCCGAGGACGCTATCTATCATAT
TGGCAGGTGTGGCATTAAGTGTTGCAGGGTTACTGATGCAGCAGCTTACACGTAATAAATTCGTCTCGCCGACGACAGCA
GGTACAATGGATTTTGCGAAGTTTGGTGTATTGATATCAATGATTTTCTTTGCGCAAGCGCCGCTATTAGTAAAACTTGG
ATTTAGTATTACAACTGCTATTCTCGGAACATTTATGTTTATGTGGATTGTTAATCGTATTAAGTTTAAAGATGCGATAT
TCATTCCGCTTGTCGGATTGATGCTGGGTAATATCGTTTCCAGCTTAGCAACATTTATGGCATTAAGATTTAATGCAATG
CAAAGTATTTCTAACTTCTTTGTCGGTGATTTTTCGATGATTACGAAAGGACGTTATGAAGTGCTGTATATCATCATTCC
GATGGTTATTATTATGTACTTCTTTGCACATCACTTTACGATTGTCGGAATGGGAGAGTCGTTTAGTAAGAACTTAGGTA
TTTCATACAATAAGATAATGAATCTCGGCGTAGTTATTGCGGCAGTTGTTTCAGCCACTGTCGTCGTAACAATCGGTGTA
TTACCATTCCTGGGATTGATTGTACCGAATATTGTTGGGCTTTTTGTCGGGGATCATATGAATAAAGCGTTACCGTACAC
TGCGCTTCTTGGAGCGATTATTGTAATGATTGCTGATATATTCAGCCGAATTATTATCTTTCCATACGAAATACCGATAG
GGCTAACGCTAGGTATTTTAGGGAGTGTTGTATTTATGATTATCCTTCTGAAAAGGAGGAAAGAATATGCCTAA

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4V3B1E1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.679

98.423

0.489