Detailed information NTG0590488

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: KYK13_RS05660
• Genome accession: NZ_CP079946
• Coordinates: 1373859..1375220 (-)
• Length: 453 a.a.
• NCBI ID: WP_223642569.1
• Uniprot ID: -
• Organism: Corallococcus sp. EGB
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1368859..1380220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KYK13_RS05650	-	1370357..1371838 (-)	1482	WP_223642565.1	HAMP domain-containing sensor histidine kinase	-
KYK13_RS05655	-	1372011..1373729 (+)	1719	WP_223642566.1	hypothetical protein	-
KYK13_RS05660	radA	1373859..1375220 (-)	1362	WP_223642569.1	DNA repair protein RadA	Machinery gene
KYK13_RS05665	-	1375400..1375669 (+)	270	WP_223642571.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
KYK13_RS05670	bioB	1375873..1376898 (+)	1026	WP_223642573.1	biotin synthase BioB	-
KYK13_RS05675	bioF	1376895..1378076 (+)	1182	WP_223642574.1	8-amino-7-oxononanoate synthase	-
KYK13_RS05680	bioD	1378066..1378761 (+)	696	WP_223642576.1	dethiobiotin synthase	-
KYK13_RS05685	-	1378879..1379157 (+)	279	WP_223642577.1	hypothetical protein	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48027.27 Da
• Isoelectric Point: 7.3489

>NTDB_id=590488 KYK13_RS05660 WP_223642569.1 1373859..1375220(-) (radA) [Corallococcus sp. EGB]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEETEAKVDDKRPAWGASGGSSRPVKLQDVTAETEVRRRTGITEFDR
VLGGGVVGGSLVLLGGDPGIGKSTLLLAALDKLSRHGPVLYVSGEESLRQTKMRAERLRVEGDAIHLFAETDAERVLQAA
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRLLRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLSERPQGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLDAKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVLPAGSARRVEATKLQVVGVETLSEALAAMFD

Nucleotide

• Length: 1362 bp

>NTDB_id=590488 KYK13_RS05660 WP_223642569.1 1373859..1375220(-) (radA) [Corallococcus sp. EGB]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCCTGCGGCTACCAGACGGCGAAGTGGCTCGGGAAGTGTCCGGACTG
CGGGGCCTGGAGCTCGCTCCTGGAGGAGACCGAAGCGAAGGTGGACGACAAGCGCCCGGCGTGGGGCGCTTCGGGGGGCT
CCTCCCGGCCGGTGAAGCTGCAGGACGTGACGGCGGAGACGGAGGTGCGCCGCAGGACGGGCATCACGGAGTTCGACCGC
GTGCTGGGCGGCGGCGTGGTGGGCGGCTCGCTGGTGCTGCTGGGAGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GGCGGCGCTGGACAAGCTGTCTCGGCACGGGCCGGTGCTCTACGTGTCGGGTGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCGGAGCGCCTGCGGGTGGAGGGGGACGCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTCCAGGCGGCG
GAGGCGCTCAAGCCGCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCGTTCGCCAAGCGCAGCGGGGTGCCCACCTTCCTGGTGGGGC
ACGTGACGAAGGAGGGCTCCATCGCGGGCCCCCGCGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAA
CGGGGCCACCCGTTCCGGCTCCTGCGCGCGCACAAGAACCGCTTCGGCAGCACCAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGGCGGACCCGTCCGCGCTGTTCCTCTCCGAGCGTCCGCAGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTCAACGGCACGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACCGGCTACGGCACGGCG
CGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGAGATTCCGCT
GGTGGGCTGCGACCTGTTCGTGAACGTGGCGGGCGGCATGCAGTTGAGCGAACCGGCGTGTGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTCCAGAACCGGCCGTTGGACGCGAAGACGCTGGTGCTGGGTGAGGTGGGGCTCGCGGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGAGGCTCGCGGAGGCCGCGAAGATGGGCTTCCAGCGGGTGGTGCTGCCCGCGGGCAG
CGCGCGGCGCGTGGAGGCGACGAAGCTCCAGGTGGTGGGCGTGGAGACCCTGAGCGAGGCGCTGGCGGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (57-219)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-33)

• Subunit ChlI of Mg-chelatase (ChlI) (351-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.655	99.779	0.525
radA	Streptococcus pneumoniae Rx1	52.097	100	0.521
radA	Streptococcus pneumoniae D39	52.097	100	0.521
radA	Streptococcus pneumoniae R6	52.097	100	0.521
radA	Streptococcus pneumoniae TIGR4	52.097	100	0.521
radA	Streptococcus mitis NCTC 12261	52.097	100	0.521
radA	Streptococcus mitis SK321	51.876	100	0.519