Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   KYX49_RS18425 Genome accession   NZ_CP079944
Coordinates   3851997..3852323 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 04117201 isolate DstkR-2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3846997..3857323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX49_RS18400 (KYX49_18295) hemC 3847615..3848532 (+) 918 WP_031944971.1 hydroxymethylbilane synthase -
  KYX49_RS18405 (KYX49_18300) - 3848537..3849304 (+) 768 WP_000897421.1 uroporphyrinogen-III synthase -
  KYX49_RS18410 (KYX49_18305) - 3849313..3850152 (+) 840 WP_001230204.1 hypothetical protein -
  KYX49_RS18415 (KYX49_18310) - 3850162..3851354 (+) 1193 Protein_3579 heme biosynthesis protein HemY -
  KYX49_RS18420 (KYX49_18315) - 3851362..3851802 (+) 441 WP_000661570.1 thioesterase family protein -
  KYX49_RS18425 (KYX49_18320) hns 3851997..3852323 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  KYX49_RS18430 (KYX49_18325) gspN 3852656..3853399 (+) 744 WP_000730343.1 type II secretion system protein N -
  KYX49_RS18435 (KYX49_18330) - 3853399..3854235 (+) 837 WP_000870033.1 type II secretion system protein N -
  KYX49_RS18440 (KYX49_18335) gspD 3854277..3856553 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  KYX49_RS18445 (KYX49_18340) - 3856594..3857223 (+) 630 WP_000219967.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=590485 KYX49_RS18425 WP_000801427.1 3851997..3852323(+) (hns) [Acinetobacter baumannii strain 04117201 isolate DstkR-2]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=590485 KYX49_RS18425 WP_000801427.1 3851997..3852323(+) (hns) [Acinetobacter baumannii strain 04117201 isolate DstkR-2]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1