Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KYT87_RS17380 Genome accession   NZ_CP079940
Coordinates   3876897..3878258 (-) Length   453 a.a.
NCBI ID   WP_046804723.1    Uniprot ID   -
Organism   Achromobacter sp. ES-001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3871897..3883258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYT87_RS17355 (KYT87_17355) - 3872257..3873258 (+) 1002 WP_219990447.1 tripartite tricarboxylate transporter substrate binding protein -
  KYT87_RS17360 (KYT87_17360) - 3873333..3874304 (+) 972 WP_104144410.1 tripartite tricarboxylate transporter substrate binding protein -
  KYT87_RS17365 (KYT87_17365) - 3874443..3875399 (+) 957 WP_219990448.1 2-hydroxyacid dehydrogenase -
  KYT87_RS17370 (KYT87_17370) - 3875572..3875808 (-) 237 WP_046804722.1 hypothetical protein -
  KYT87_RS17375 (KYT87_17375) - 3876009..3876848 (-) 840 WP_219990449.1 sulfite exporter TauE/SafE family protein -
  KYT87_RS17380 (KYT87_17380) radA 3876897..3878258 (-) 1362 WP_046804723.1 DNA repair protein RadA Machinery gene
  KYT87_RS17385 (KYT87_17385) - 3878610..3879239 (+) 630 WP_104144409.1 hypothetical protein -
  KYT87_RS17390 (KYT87_17390) hpaR 3879382..3879852 (+) 471 WP_104144408.1 homoprotocatechuate degradation operon regulator HpaR -
  KYT87_RS17395 (KYT87_17395) hpaD 3879880..3880731 (-) 852 WP_219990450.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  KYT87_RS17400 (KYT87_17400) hpaE 3880754..3882220 (-) 1467 WP_219990451.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48225.28 Da        Isoelectric Point: 6.7633

>NTDB_id=590347 KYT87_RS17380 WP_046804723.1 3876897..3878258(-) (radA) [Achromobacter sp. ES-001]
MAKSRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETVESSTPAAAAHRYAPLASASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSETTNVLYVTGEESAEQVALRARRLDLQTGNVNLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELSAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHSPN
PRRLTVGLEGNRLAMLLAVMHRHAGVTTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=590347 KYT87_RS17380 WP_046804723.1 3876897..3878258(-) (radA) [Achromobacter sp. ES-001]
ATGGCCAAATCCCGAACCGTATATGTGTGCGCCGACTGCGGCGGCACCACCCCGAAGTGGCAGGGTAAATGCCCGCATTG
CAACGCCTGGAACACGCTGGAAGAAACCGTCGAGTCCTCGACGCCCGCCGCCGCCGCGCACCGTTACGCGCCGCTGGCCT
CTGCCAGCCCGGTGCGCAGCCTGTCTGAAATCGAAGCCCGCGAAACACCACGCCAGCCGACCGGGCTGGACGAATTCGAC
CGCGTCCTGGGCGGCGGCCTGGTCGCCGGCGCCGTGGTGCTGATCGGCGGCGATCCGGGGATCGGCAAATCCACGCTGTT
GTTGCAGGCGCTGGCCTCGCTGTCCGAAACCACCAACGTGCTGTATGTGACGGGCGAGGAATCGGCCGAACAGGTCGCCT
TGCGCGCACGCCGGCTGGACTTGCAGACGGGCAACGTGAACCTGCTGGCCGAGATCCGCCTGGAAGCGATCCAGGCTGCC
GTGTCCGAACAGAAGCCTACCGTGGCCGTTATCGACTCCATCCAGACCCTGTACAGCGGCGAACTCAGCGCCGCGCCGGG
GTCGGTGTCGCAGGTGCGCGAATGCGCGGCGCAATTGACGCGCCTGGCCAAGCAGACCGGCATCGCGATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATTGTGGACACCGTGCTGTATTTCGAAGGC
GACACGCATTCCTCGTTCCGGCTGGTGCGCGCATTCAAGAACCGCTTTGGCGCCGTCAACGAGCTGGGCGTTTTTGCGAT
GACCGACCGTGGCCTGCGCGGCGTGGCCAACCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGCAGGTGGCCGGGTCCT
GCGTGATGGCCACGCAAGAGGGCACGCGCCCGCTGCTGGTTGAAATCCAGGCTTTGGTCGACAGTTCGCATTCGCCCAAT
CCGCGCCGCCTGACGGTGGGCCTTGAAGGCAACCGGCTGGCCATGTTGCTGGCGGTGATGCACCGGCACGCGGGTGTCAC
CACGTTTGACCAGGACGTGTTCGTCAACGCCGTGGGCGGTGTGCGCATCACCGAACCGGCCGCCGACTTGCCGGTGCTGC
TGGCCATCATGTCCTCGCTGCGCGACAAGCCCTTGCCGCGCGGCCTGATCGCGTTCGGCGAAGTTGGTCTGGCCGGCGAG
ATCCGTCCCGCGCCGCGCGGCCAGGAACGCTTGCGCGAAGCCGCCAAGCTGGGTTTTTCAATTGCGCTGATCCCCAAGGC
CAACGCCCCGCGCCAACCCATTGAAGGGTTGGAGATCTGGGCGGTGGACCGGCTGGACGCCGCGTTGGACAAGTTGCGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.494
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461
  radA Streptococcus pneumoniae Rx1

48.357

94.04

0.455
  radA Streptococcus pneumoniae R6

48.357

94.04

0.455
  radA Streptococcus pneumoniae TIGR4

48.357

94.04

0.455
  radA Streptococcus pneumoniae D39

48.357

94.04

0.455
  radA Streptococcus mitis SK321

48.357

94.04

0.455