Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KY275_RS21000 Genome accession   NZ_CP079939
Coordinates   3995096..3996529 (+) Length   477 a.a.
NCBI ID   WP_003861864.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain G17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3990096..4001529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY275_RS20970 (KY275_20975) - 3990663..3991640 (+) 978 WP_213789278.1 calcium/sodium antiporter -
  KY275_RS20975 (KY275_20980) kdsD 3991654..3992640 (+) 987 WP_003861853.1 arabinose-5-phosphate isomerase KdsD -
  KY275_RS20980 (KY275_20985) kdsC 3992655..3993221 (+) 567 WP_047051238.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  KY275_RS20985 (KY275_20990) lptC 3993218..3993793 (+) 576 WP_015571983.1 LPS export ABC transporter periplasmic protein LptC -
  KY275_RS20990 (KY275_20995) lptA 3993762..3994316 (+) 555 WP_015571984.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  KY275_RS20995 (KY275_21000) lptB 3994323..3995048 (+) 726 WP_003861862.1 LPS export ABC transporter ATP-binding protein -
  KY275_RS21000 (KY275_21005) rpoN/rpoN1 3995096..3996529 (+) 1434 WP_003861864.1 RNA polymerase factor sigma-54 Machinery gene
  KY275_RS21005 (KY275_21010) hpf 3996552..3996839 (+) 288 WP_003861866.1 ribosome hibernation promoting factor -
  KY275_RS21010 (KY275_21015) ptsN 3996922..3997413 (+) 492 WP_003861869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KY275_RS21015 (KY275_21020) rapZ 3997459..3998313 (+) 855 WP_003861870.1 RNase adapter RapZ -
  KY275_RS21020 (KY275_21025) npr 3998310..3998582 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  KY275_RS21025 (KY275_21030) mtgA 3998621..3999346 (-) 726 WP_047051240.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  KY275_RS21030 (KY275_21035) elbB 3999343..3999996 (-) 654 WP_062933422.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54099.96 Da        Isoelectric Point: 4.3358

>NTDB_id=590331 KY275_RS21000 WP_003861864.1 3995096..3996529(+) (rpoN/rpoN1) [Enterobacter hormaechei strain G17]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQTQDTETLDSVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESIGDDEIELEEIEAVLKRVQRFDPIGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLQINQQYASMCTSARNDADNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=590331 KY275_RS21000 WP_003861864.1 3995096..3996529(+) (rpoN/rpoN1) [Enterobacter hormaechei strain G17]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAGCAACTGGCCATGACGCCGCAGCTACAGCAGGCAATCCGTCTGTTGCA
GCTGTCCACGTTAGAACTCCAGCAGGAACTCCAGCAGGCGCTGGACAGCAATCCGCTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACGCCCAGCAGACGCAGGACACAGAAACGCTCGACTCCGTAGATGCGCTCGAACAGAAAGAGATGCCGGAC
GAACTGCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCGGGTACCCCTTCCGGGACGCGTGCAGACTACCAGGATGA
TGAACTCCCGGTCTACCAGGGCGAAACCACCCAGTCGCTTCAGGACTACCTGATGTGGCAGGTAGAGCTGACCCCTTTCT
CCGATACCGATCGCGCCATTGCCACCTCGATTGTCGATGCCGTTGACGACACGGGCTATTTGACCGTGACGCTGGACGAG
ATTCTGGAAAGCATCGGCGATGACGAGATTGAACTGGAAGAGATTGAAGCCGTCCTGAAACGCGTTCAGCGTTTCGACCC
GATTGGCGTCGCCGCGAAAGATCTGCGCGACTGCCTTCTGATCCAGCTTTCGCAGTTTGCCAAAGAGACACCGTGGATTG
ACGAAGCCCGGCTCATCATCAGCGATCATCTGGATCTGCTGGCGAATCACGACTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAGGAAGCGGTGAATCTGATCCAGTCACTTGATCCGCGTCCGGGGCAGTCGATCCAGACCAG
CGAACCGGAATATGTCATTCCTGATGTGCTGGTGAGAAAACACAATGGCCGGTGGGTCGTTGAACTGAACGCCGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAATACGCCTCCATGTGCACCAGCGCACGTAATGACGCTGATAATCAATATATTCGC
AGCAACCTTCAGGAAGCACGCTGGTTGATCAAGAGTCTGGAGAGCCGTAATGACACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTTTATGAAACCGATGGTGCTGGCGGACATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAACACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCCATTCGCGCACTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTCAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48