Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FGCSD_RS06220 Genome accession   NZ_AP018726
Coordinates   1234905..1236677 (-) Length   590 a.a.
NCBI ID   WP_129555814.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229905..1241677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS06205 (FGCSD_1177) - 1230618..1232642 (+) 2025 WP_129555812.1 bifunctional metallophosphatase/5'-nucleotidase -
  FGCSD_RS06210 (FGCSD_1178) - 1232830..1233240 (-) 411 WP_012766836.1 peptide deformylase -
  FGCSD_RS06215 (FGCSD_1179) gdhA 1233365..1234714 (-) 1350 WP_129555813.1 NADP-specific glutamate dehydrogenase -
  FGCSD_RS06220 (FGCSD_1180) rcrQ 1234905..1236677 (-) 1773 WP_129555814.1 ABC transporter ATP-binding protein Regulator
  FGCSD_RS06225 (FGCSD_1181) rcrP 1236677..1238422 (-) 1746 WP_129555815.1 ABC transporter ATP-binding protein Regulator
  FGCSD_RS06230 (FGCSD_1182) - 1238530..1240407 (-) 1878 WP_129555816.1 ABC-F family ATP-binding cassette domain-containing protein -
  FGCSD_RS06235 (FGCSD_1183) - 1240404..1241612 (-) 1209 WP_172595984.1 CCA tRNA nucleotidyltransferase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65995.44 Da        Isoelectric Point: 5.4620

>NTDB_id=59031 FGCSD_RS06220 WP_129555814.1 1234905..1236677(-) (rcrQ) [Streptococcus dysgalactiae strain Kdys0611]
MAEQHVFKRVWTYLRAYRGLIFLAVFLKIISAVMSVLEPFVLGLVITELSSNLLDMAKGIEGAGINTSYIAFLLLVYFIR
ALCYEIGAYGSNYVMTKAVQSTIRDLRQALSQKINRIPVSYFDQHQFGDMLGRFTSDVETVSNALQQSFLQIVNAFLTIF
LVMAMVLYLNLTLALIVIVAIPIIYASSQFILKKSQPYFKEQAKVLGEMNGFVQENLSGFDVLKLYGREEASEQAFHQIT
EHLQDVGFKASFLSGIMMPVLHFISDSVYMIVALVAGLQVMAGQLTIGNMQAFVQYIWQISQPIQTITQLAGLLQSAKSS
LERIFAVLDEADDAMLVTDQLDEDLTGQVSFNHVDFSYQADKPLIKEFTLDVNPGEMIAIVGPTGAGKTTLINLLMRFYD
VDKGSITVDGHDIRDLSRQSYRRQFGMVLQDAWLYEGTIQDNLRFGNLEASDEAIVEAAKAANVDHFIRTLPGGYHMVMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHDSLLAAQGFYFDLYHSQFKSSQP

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=59031 FGCSD_RS06220 WP_129555814.1 1234905..1236677(-) (rcrQ) [Streptococcus dysgalactiae strain Kdys0611]
ATGGCGGAGCAACATGTTTTTAAGCGGGTGTGGACCTATTTAAGGGCCTACCGTGGCTTAATCTTTTTAGCAGTTTTCCT
TAAAATTATCAGTGCTGTCATGAGTGTCTTGGAACCCTTTGTGCTTGGTTTAGTCATTACAGAATTGTCATCTAATCTTC
TTGATATGGCTAAGGGGATTGAAGGAGCAGGGATTAATACCTCTTATATTGCTTTTTTACTGCTTGTCTATTTTATTCGT
GCATTATGTTATGAAATCGGAGCCTATGGGTCAAATTATGTCATGACCAAGGCTGTTCAATCTACTATTCGTGATTTGAG
ACAGGCCTTGAGTCAAAAAATTAATCGTATTCCTGTCTCTTATTTTGACCAACACCAGTTTGGGGATATGCTGGGACGCT
TCACCTCAGATGTTGAGACAGTGTCAAATGCTTTGCAACAGTCTTTCTTGCAGATTGTCAATGCCTTTCTCACCATTTTT
CTCGTGATGGCAATGGTCTTGTACCTCAATCTGACACTAGCTTTGATTGTGATTGTTGCTATTCCTATTATCTATGCTTC
ATCTCAATTCATTTTAAAAAAATCACAACCTTATTTTAAAGAGCAAGCTAAGGTGTTAGGAGAGATGAATGGTTTTGTTC
AGGAAAATCTATCGGGTTTTGACGTCTTAAAACTTTACGGGCGCGAAGAAGCCTCAGAGCAAGCCTTCCATCAGATTACT
GAACACTTGCAAGATGTTGGGTTTAAGGCAAGCTTTTTATCCGGTATTATGATGCCTGTTTTGCATTTTATTTCTGATTC
TGTCTATATGATTGTTGCTTTGGTCGCAGGTCTGCAAGTTATGGCAGGACAATTGACCATTGGGAATATGCAAGCTTTTG
TTCAATATATTTGGCAAATCAGTCAGCCAATTCAAACCATTACCCAGTTAGCAGGTTTATTACAGAGTGCTAAATCATCC
TTAGAACGTATTTTTGCGGTTCTGGACGAGGCAGATGATGCCATGCTTGTGACAGATCAACTGGATGAGGATTTAACAGG
TCAAGTCTCATTTAACCATGTGGATTTTTCCTATCAGGCTGATAAACCTTTGATCAAAGAGTTTACACTTGATGTTAACC
CCGGTGAGATGATTGCGATTGTAGGACCAACTGGAGCTGGGAAAACGACTCTCATTAACCTCTTGATGCGTTTTTATGAT
GTGGATAAAGGATCTATTACTGTTGATGGGCATGATATTCGTGACCTGTCACGTCAATCCTATCGCCGCCAATTTGGTAT
GGTCCTACAAGATGCTTGGCTTTACGAAGGGACAATCCAAGATAACCTTCGCTTTGGGAACCTTGAAGCCAGCGATGAGG
CTATTGTAGAAGCAGCCAAGGCTGCCAATGTGGATCATTTTATCAGAACCTTGCCAGGTGGGTACCACATGGTGATGAAC
CAAGAATCTAGTAATATTTCCTTAGGTCAAAAACAACTCTTAACCATTGCAAGGGCCTTGTTGGCTGATCCTAAAATTCT
GATTTTAGATGAAGCGACCTCTTCGGTAGATACTAGGCTAGAATTATTGATTCAAAAGGCGATGAAGCGGTTAATGAAAG
GACGAACAAGCTTTGTGATTGCACACCGTCTGTCTACAATTCAAGAAGCTGATAAGATTCTAGTATTAAAAGATGGTCAG
ATCATTGAACAAGGGAACCATGACAGTTTATTGGCTGCTCAAGGTTTCTATTTTGATCTCTATCATAGTCAATTTAAATC
CAGTCAACCCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-303)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.463

99.831

0.434

Multiple sequence alignment