Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FGCSD_RS03210 Genome accession   NZ_AP018726
Coordinates   613619..615280 (+) Length   553 a.a.
NCBI ID   WP_129555430.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 608619..620280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS03180 (FGCSD_0567) - 608919..609767 (+) 849 WP_129555425.1 NAD(P)H-hydrate dehydratase -
  FGCSD_RS03185 (FGCSD_0568) xseA 609918..611258 (+) 1341 WP_129555426.1 exodeoxyribonuclease VII large subunit -
  FGCSD_RS03190 (FGCSD_0569) - 611236..611451 (+) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  FGCSD_RS03195 (FGCSD_0570) - 611451..612323 (+) 873 WP_129555427.1 polyprenyl synthetase family protein -
  FGCSD_RS03200 (FGCSD_0571) - 612316..613143 (+) 828 WP_129555428.1 TlyA family RNA methyltransferase -
  FGCSD_RS03205 (FGCSD_0572) - 613130..613600 (+) 471 WP_129555429.1 arginine repressor -
  FGCSD_RS03210 (FGCSD_0573) recN 613619..615280 (+) 1662 WP_129555430.1 DNA repair protein RecN Machinery gene
  FGCSD_RS03215 (FGCSD_0574) - 615487..616404 (+) 918 WP_129555431.1 LPXTG cell wall anchor domain-containing protein -
  FGCSD_RS03220 (FGCSD_0575) - 616623..617462 (+) 840 WP_129555432.1 DegV family protein -
  FGCSD_RS03225 (FGCSD_0576) - 617455..618297 (+) 843 WP_172595971.1 SGNH/GDSL hydrolase family protein -
  FGCSD_RS03230 (FGCSD_0577) - 618275..618862 (+) 588 WP_111717050.1 YpmS family protein -
  FGCSD_RS03235 (FGCSD_0578) - 618961..619236 (+) 276 WP_003044261.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62153.30 Da        Isoelectric Point: 4.5991

>NTDB_id=59012 FGCSD_RS03210 WP_129555430.1 613619..615280(+) (recN) [Streptococcus dysgalactiae strain Kdys0611]
MLLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRHGANKAEIEGFFSVDANPALVACL
EASGITMEEDLVIRRDIFANGRSVSRINGQMVNLATLKEVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIESAALNRGEDERLGQERDRLLNHKKIADTLTNAYIMLDNED
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGDV
NDVLDYYDNIVKEYQLLTGDELSSGDLEAELKSLEKQLVAAASELSVSRHQLAEQLETDIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISKKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTSEERVEEIARMLAGADMTEAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=59012 FGCSD_RS03210 WP_129555430.1 613619..615280(+) (recN) [Streptococcus dysgalactiae strain Kdys0611]
ATGCTATTAGAAATTTCCATTAAAAATTTTGCCATTATTGAGGAAATCTCTCTGAATTTTGAAAATGGCATGACAGTTTT
GACGGGTGAAACAGGAGCTGGAAAGTCCATTATTATTGATGCCATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGCCACGGCGCTAATAAGGCAGAAATTGAAGGCTTTTTTTCCGTAGACGCCAATCCGGCACTGGTTGCATGTTTA
GAAGCCTCTGGAATTACAATGGAAGAAGATTTGGTAATCCGCCGAGATATTTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACTTAGCGACCTTAAAAGAGGTCGGGCAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAACTCCACCAGCAAATTTTGGATGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGACAGGTTATTGATAAACAAAAAAATGAAAAAGAACATAAAGA
TCGTATCGACATGTTGGCTTTTCAGATAGCGGAGATTGAATCTGCAGCTTTGAATCGAGGAGAAGATGAGCGACTAGGTC
AAGAACGTGATCGTTTGTTAAATCATAAGAAAATTGCTGATACCTTAACTAATGCTTATATCATGCTAGATAATGAAGAT
TTTTCAAGCCTATCCAATATTCGCTCTAGCATGAATGACTTGCTATCAATTGAGCAGTTTGATTCTGAGTACAAGGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAGCTGGATT
TTGATGGTGGGCGACTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGCGATGTG
AATGATGTGCTTGACTACTACGATAATATCGTTAAAGAATACCAGCTATTAACAGGCGATGAGTTGTCTTCAGGGGACCT
AGAGGCAGAATTGAAAAGCTTAGAAAAACAATTGGTTGCTGCTGCTTCGGAGTTAAGTGTCTCTCGCCATCAATTGGCGG
AGCAATTAGAAACTGATATCAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGACTTCAAAGTTCACTTTACCACC
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCCACCAATCCAGGTGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCGGGCGGCGAATTATCACGCTTGATGTTGGCCATCAAGGCAGCTATCTCTAAAAAAGAAGATAAAACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGAGTTGCTCAAGCCATTGCCCAAAAGATTTATAAAATTGGG
CGACATGGTCAAGTTCTCGCTATTTCACACTTACCTCAAGTCATTGCCATTGCTGATTACCAGTATTTTATTTCTAAAGA
GAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTGTTAACTTCTGAAGAACGTGTGGAAGAAATTGCCAGAATGCTTG
CTGGTGCAGACATGACAGAAGCTGCTCTCACTCAGGCTCGTGAATTACTGGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.444

100

0.456

Multiple sequence alignment