Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   KZB15_RS02510 Genome accession   NZ_CP079922
Coordinates   512788..513054 (+) Length   88 a.a.
NCBI ID   WP_001819358.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain R36A     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 512215..512517 512788..513054 flank 271


Gene organization within MGE regions


Location: 512215..513054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZB15_RS02505 (KZB15_02520) - 512215..512662 (+) 448 Protein_507 IS30 family transposase -
  KZB15_RS02510 (KZB15_02525) HI0659 512788..513054 (+) 267 WP_001819358.1 helix-turn-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9667.20 Da        Isoelectric Point: 4.6537

>NTDB_id=590102 KZB15_RS02510 WP_001819358.1 512788..513054(+) (HI0659) [Streptococcus pneumoniae strain R36A]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VRLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=590102 KZB15_RS02510 WP_001819358.1 512788..513054(+) (HI0659) [Streptococcus pneumoniae strain R36A]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAGTC
GTCCGACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

58.442

87.5

0.511