Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BALI_RS13320 Genome accession   NC_021362
Coordinates   2718720..2719784 (-) Length   354 a.a.
NCBI ID   WP_020452178.1    Uniprot ID   -
Organism   Bacillus paralicheniformis ATCC 9945a     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2713720..2724784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BALI_RS13275 (BaLi_c27230) tapA 2714214..2714942 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  BALI_RS13280 (BaLi_c27240) - 2715220..2715540 (+) 321 WP_020452170.1 YqzG/YhdC family protein -
  BALI_RS13285 (BaLi_c27241) - 2715570..2715752 (-) 183 WP_020452171.1 YqzE family protein -
  BALI_RS13290 (BaLi_c27250) comGG 2715841..2716206 (-) 366 WP_020452172.1 competence type IV pilus minor pilin ComGG -
  BALI_RS13295 (BaLi_c27260) comGF 2716218..2716706 (-) 489 WP_236613657.1 competence type IV pilus minor pilin ComGF -
  BALI_RS13300 (BaLi_c27261) comGE 2716615..2716962 (-) 348 WP_020452174.1 competence type IV pilus minor pilin ComGE -
  BALI_RS13305 (BaLi_c27270) comGD 2716946..2717383 (-) 438 WP_020452175.1 competence type IV pilus minor pilin ComGD -
  BALI_RS13310 (BaLi_c27280) comGC 2717389..2717682 (-) 294 WP_020452176.1 competence type IV pilus major pilin ComGC Machinery gene
  BALI_RS13315 (BaLi_c27290) comGB 2717696..2718730 (-) 1035 WP_041817253.1 competence type IV pilus assembly protein ComGB Machinery gene
  BALI_RS13320 (BaLi_c27300) comGA 2718720..2719784 (-) 1065 WP_020452178.1 competence type IV pilus ATPase ComGA Machinery gene
  BALI_RS13325 (BaLi_c27310) - 2719942..2720781 (-) 840 WP_020452179.1 STAS domain-containing protein -
  BALI_RS13335 (BaLi_c27330) - 2721023..2721400 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BALI_RS13340 (BaLi_c27340) - 2721611..2721856 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  BALI_RS13345 (BaLi_c27350) - 2721893..2722531 (-) 639 WP_020452181.1 MBL fold metallo-hydrolase -
  BALI_RS21975 (BaLi_c27360) - 2722687..2722860 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  BALI_RS13355 (BaLi_c27370) - 2722921..2723235 (-) 315 WP_020452182.1 MTH1187 family thiamine-binding protein -
  BALI_RS13360 (BaLi_c27380) - 2723251..2724360 (-) 1110 WP_020452183.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39806.27 Da        Isoelectric Point: 9.1063

>NTDB_id=59010 BALI_RS13320 WP_020452178.1 2718720..2719784(-) (comGA) [Bacillus paralicheniformis ATCC 9945a]
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKDRLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINRQPVHLRMSTLPTIHDESLVIRLLPKVSSKPLTKLSLFPSATFKLLSFLKHSHGLILFTGPTGSGKTTTLYSLIEY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGVDMTEIEQTLVAISAQRLVGLVCPFCGDNCSLYCRLSRPVRRASIFELLYGKSLNLCIEEAKGRC
GDIKTETLKTLIQKGIALGYLPSNTYERWIGHED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=59010 BALI_RS13320 WP_020452178.1 2718720..2719784(-) (comGA) [Bacillus paralicheniformis ATCC 9945a]
TTGTACACGATTGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTCCGCTTCAGGATTGATGATGAACTTTTTCAAAAAGACAGATTAACGAGAAATGAGTGCT
CAAGGCTCATTTCTCACTTTAAATTCCTTTCTTCGATGGATATTGGGGAAAGACGGCTGCCGCAAAGCGGAGCTTTGACT
CTTTATATCAACCGTCAGCCCGTTCATTTAAGAATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGGTGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTTCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATTCTGTTCACCGGTCCGACAGGCTCGGGGAAAACGACAACACTCTATTCTTTAATCGAATAC
GCTAAGCGGCATTTTAAGCGAAATATCATTACCTTGGAAGACCCTGTTGAATCAAGAAGCGAAAACATTTTGCAAGTGCA
AGTAAACGAAAAAGCTGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTTCGCCACGATCCGGACATGATCATCCTCG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACAGGACACCTTGTTTTATCGAGCATGCAT
GCGAAAAATGCCAAAGGCGCAATATACAGGCTGCTCGAGTTCGGCGTTGATATGACAGAAATTGAACAAACACTGGTCGC
AATCAGCGCCCAGCGCCTCGTCGGTCTCGTCTGCCCGTTTTGCGGCGACAACTGCTCTTTATATTGCAGATTGTCGAGGC
CTGTGAGAAGAGCAAGCATCTTCGAGCTTTTGTACGGAAAAAGCCTCAATCTCTGCATCGAAGAAGCAAAAGGCAGGTGC
GGTGACATAAAAACAGAAACATTGAAAACGCTGATCCAGAAGGGAATAGCACTCGGATATCTGCCGTCGAATACTTATGA
ACGCTGGATAGGCCATGAAGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

67.514

100

0.675
  pilB Vibrio cholerae strain A1552

38.671

93.503

0.362

Multiple sequence alignment