Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KZA81_RS18250 Genome accession   NZ_CP079903
Coordinates   3911236..3911871 (-) Length   211 a.a.
NCBI ID   WP_009685211.1    Uniprot ID   A0A7W2QUJ4
Organism   Pseudomonas juntendi strain K37-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3906236..3916871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZA81_RS18220 (KZA81_18105) murB 3907334..3908353 (-) 1020 WP_235767971.1 UDP-N-acetylmuramate dehydrogenase -
  KZA81_RS18225 (KZA81_18110) - 3908350..3908814 (-) 465 WP_054905783.1 low molecular weight protein-tyrosine-phosphatase -
  KZA81_RS18230 (KZA81_18115) kdsB 3908814..3909578 (-) 765 WP_054905782.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KZA81_RS18235 (KZA81_18120) - 3909575..3909760 (-) 186 WP_003247142.1 Trm112 family protein -
  KZA81_RS18240 (KZA81_18125) lpxK 3909804..3910805 (-) 1002 WP_054905781.1 tetraacyldisaccharide 4'-kinase -
  KZA81_RS18245 (KZA81_18130) - 3910805..3911239 (-) 435 WP_012271149.1 biopolymer transporter ExbD -
  KZA81_RS18250 (KZA81_18135) exbB 3911236..3911871 (-) 636 WP_009685211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KZA81_RS18255 (KZA81_18140) comA 3912049..3914262 (-) 2214 WP_235767972.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KZA81_RS18260 (KZA81_18145) - 3914405..3914911 (+) 507 Protein_3586 DUF2062 domain-containing protein -
  KZA81_RS18265 (KZA81_18150) - 3914921..3915700 (-) 780 WP_009681883.1 ABC transporter permease -
  KZA81_RS18270 (KZA81_18155) - 3915697..3916629 (-) 933 WP_009681882.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=590051 KZA81_RS18250 WP_009685211.1 3911236..3911871(-) (exbB) [Pseudomonas juntendi strain K37-3]
MWELVKSGGWMMLPIILSSIAAMAIVIERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGTQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=590051 KZA81_RS18250 WP_009685211.1 3911236..3911871(-) (exbB) [Pseudomonas juntendi strain K37-3]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCAT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCACACTTGCTGGGCCAGGTCTGGATATGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCGCTGCGCGCCGATTCGCCACTGGGTGAGATCCTCGCCGCGGGCCTGGCCAAT
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAAGAGGCGGCTTCGCGCGTTATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCTGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCACGCAGATGACCGCCAACGCCGCGGTACTGGCCGGTGGTATTTCCAAGGCCCTGGTCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2QUJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82