Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KYD87_RS00410 Genome accession   NZ_CP079891
Coordinates   89075..89704 (+) Length   209 a.a.
NCBI ID   WP_000793790.1    Uniprot ID   A0A7L6ZPA1
Organism   Escherichia fergusonii strain 5zf15-2-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 84075..94704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYD87_RS00390 (KYD87_00385) - 84488..86248 (-) 1761 WP_000156542.1 Lon protease family protein -
  KYD87_RS00395 (KYD87_00390) matP 86433..86888 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  KYD87_RS00400 (KYD87_00395) ompA 86943..87992 (-) 1050 WP_181591391.1 porin OmpA -
  KYD87_RS00405 (KYD87_00400) sulA 88349..88858 (-) 510 WP_181674319.1 SOS-induced cell division inhibitor SulA -
  KYD87_RS00410 (KYD87_00405) sxy/tfoX 89075..89704 (+) 630 WP_000793790.1 TfoX/Sxy family DNA transformation protein Regulator
  KYD87_RS00415 (KYD87_00410) yccS 89667..91820 (-) 2154 WP_223666081.1 YccS family putative transporter -
  KYD87_RS00420 (KYD87_00415) - 91840..92286 (-) 447 WP_002431615.1 YccF domain-containing protein -
  KYD87_RS00425 (KYD87_00420) helD 92409..94463 (+) 2055 WP_182211956.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24359.36 Da        Isoelectric Point: 9.5059

>NTDB_id=590018 KYD87_RS00410 WP_000793790.1 89075..89704(+) (sxy/tfoX) [Escherichia fergusonii strain 5zf15-2-1]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=590018 KYD87_RS00410 WP_000793790.1 89075..89704(+) (sxy/tfoX) [Escherichia fergusonii strain 5zf15-2-1]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6ZPA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699