Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMJ87_RS15615 Genome accession   NZ_CP079839
Coordinates   3269276..3269881 (+) Length   201 a.a.
NCBI ID   WP_001202379.1    Uniprot ID   A0A734HUC9
Organism   Salmonella enterica strain LHICA_E3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3264276..3274881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ87_RS15595 (JMJ87_15585) - 3264672..3266432 (-) 1761 WP_023177834.1 Lon protease family protein -
  JMJ87_RS15600 (JMJ87_15590) matP 3266618..3267070 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  JMJ87_RS15605 (JMJ87_15595) ompA 3267142..3268194 (-) 1053 WP_023177836.1 porin OmpA -
  JMJ87_RS15610 (JMJ87_15600) sulA 3268550..3269059 (-) 510 WP_000288728.1 SOS-induced cell division inhibitor SulA -
  JMJ87_RS15615 (JMJ87_15605) sxy/tfoX 3269276..3269881 (+) 606 WP_001202379.1 TfoX/Sxy family DNA transformation protein Regulator
  JMJ87_RS15620 (JMJ87_15610) yccS 3269868..3272021 (-) 2154 WP_023177838.1 YccS family putative transporter -
  JMJ87_RS15625 (JMJ87_15615) - 3272040..3272486 (-) 447 WP_079806572.1 YccF domain-containing protein -
  JMJ87_RS15630 (JMJ87_15620) helD 3272610..3274663 (+) 2054 Protein_3055 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23160.85 Da        Isoelectric Point: 8.7403

>NTDB_id=589873 JMJ87_RS15615 WP_001202379.1 3269276..3269881(+) (sxy/tfoX) [Salmonella enterica strain LHICA_E3]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRTLGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=589873 JMJ87_RS15615 WP_001202379.1 3269276..3269881(+) (sxy/tfoX) [Salmonella enterica strain LHICA_E3]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAACAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCACACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCGTTAGAAGGCGCAATTGTGGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A734HUC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.382

99.005

0.756