Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMJ83_RS15130 Genome accession   NZ_CP079838
Coordinates   3101429..3102034 (-) Length   201 a.a.
NCBI ID   WP_001202379.1    Uniprot ID   A0A734HUC9
Organism   Salmonella enterica subsp. salamae strain LHICA_SA3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3096429..3107034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ83_RS15115 (JMJ83_15115) helD 3096646..3098700 (-) 2055 WP_219190650.1 DNA helicase IV -
  JMJ83_RS15120 (JMJ83_15120) - 3098824..3099270 (+) 447 WP_079806572.1 YccF domain-containing protein -
  JMJ83_RS15125 (JMJ83_15125) yccS 3099289..3101442 (+) 2154 WP_023177838.1 YccS family putative transporter -
  JMJ83_RS15130 (JMJ83_15130) sxy/tfoX 3101429..3102034 (-) 606 WP_001202379.1 TfoX/Sxy family DNA transformation protein Regulator
  JMJ83_RS15135 (JMJ83_15135) sulA 3102251..3102760 (+) 510 WP_000288728.1 SOS-induced cell division inhibitor SulA -
  JMJ83_RS15140 (JMJ83_15140) ompA 3103117..3104169 (+) 1053 WP_023177836.1 porin OmpA -
  JMJ83_RS15145 (JMJ83_15145) matP 3104241..3104693 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  JMJ83_RS15150 (JMJ83_15150) - 3104879..3106639 (+) 1761 WP_023177834.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23160.85 Da        Isoelectric Point: 8.7403

>NTDB_id=589848 JMJ83_RS15130 WP_001202379.1 3101429..3102034(-) (sxy/tfoX) [Salmonella enterica subsp. salamae strain LHICA_SA3]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRTLGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=589848 JMJ83_RS15130 WP_001202379.1 3101429..3102034(-) (sxy/tfoX) [Salmonella enterica subsp. salamae strain LHICA_SA3]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAACAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCACACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCGTTAGAAGGCGCAATTGTGGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A734HUC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.382

99.005

0.756