Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FGCSD_RS00635 Genome accession   NZ_AP018726
Coordinates   111253..112017 (+) Length   254 a.a.
NCBI ID   WP_012766408.1    Uniprot ID   A0A9X9GAR3
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 106253..117017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS00620 (FGCSD_0090) - 107520..108734 (+) 1215 WP_129555142.1 CHAP domain-containing protein -
  FGCSD_RS00625 (FGCSD_0091) - 108885..109907 (-) 1023 WP_129555386.1 IS30 family transposase -
  FGCSD_RS00630 (FGCSD_0092) - 110065..111027 (+) 963 WP_003049033.1 ribose-phosphate diphosphokinase -
  FGCSD_RS00635 (FGCSD_0093) recO 111253..112017 (+) 765 WP_012766408.1 DNA repair protein RecO Machinery gene
  FGCSD_RS00640 (FGCSD_0094) plsX 112124..113131 (+) 1008 WP_129555143.1 phosphate acyltransferase PlsX -
  FGCSD_RS00645 (FGCSD_0095) - 113124..113366 (+) 243 WP_129555144.1 phosphopantetheine-binding protein -
  FGCSD_RS00650 (FGCSD_0096) purC 113532..114242 (+) 711 WP_129555145.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30015.21 Da        Isoelectric Point: 5.7481

>NTDB_id=58981 FGCSD_RS00635 WP_012766408.1 111253..112017(+) (recO) [Streptococcus dysgalactiae strain Kdys0611]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INQDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVIYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=58981 FGCSD_RS00635 WP_012766408.1 111253..112017(+) (recO) [Streptococcus dysgalactiae strain Kdys0611]
ATGCAGTTAAACGAGTCATTGGGAATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGACAGCAGGCAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATTCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGACTACAATCATGTGGATACTTATCAACAG
ATTAATCAGGACCTTTTTCGACTTTCCTATGCGAGTTATGTAGTGGCTTTGGCAGATGCCGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTCTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCAAGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTTTGCCCTGAACATTATCATAAAGATGACTACCGGAATCATCTAGA
TCCTAATGTCATCTATTTACTAGACCGTTTTCAAACCATTCAGTTTGATGAATTGAGAACGATTTCCTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTTATTGATGAGTTATATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGCGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X9GAR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.821

96.85

0.618

Multiple sequence alignment