Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KW556_RS02755 Genome accession   NZ_CP079823
Coordinates   567359..567946 (-) Length   195 a.a.
NCBI ID   WP_069529269.1    Uniprot ID   -
Organism   Aeromonas veronii strain HD6454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 562359..572946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW556_RS02730 (KW556_02715) - 562837..564255 (-) 1419 WP_004576012.1 IS66-like element ISAs21 family transposase -
  KW556_RS02735 (KW556_02720) yjbD 564474..564758 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  KW556_RS02740 (KW556_02725) - 564905..565807 (-) 903 WP_259584788.1 cation diffusion facilitator family transporter -
  KW556_RS02745 - 566268..566393 (+) 126 WP_019445191.1 hypothetical protein -
  KW556_RS02750 (KW556_02730) - 566466..567209 (-) 744 WP_259588729.1 ABC transporter substrate-binding protein -
  KW556_RS02755 (KW556_02735) ssb 567359..567946 (-) 588 WP_069529269.1 single-stranded DNA-binding protein Machinery gene
  KW556_RS02760 (KW556_02740) uvrA 568317..571145 (+) 2829 WP_259584797.1 excinuclease ABC subunit UvrA -
  KW556_RS02765 (KW556_02745) - 571267..572940 (+) 1674 WP_259584799.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21556.09 Da        Isoelectric Point: 5.9301

>NTDB_id=589788 KW556_RS02755 WP_069529269.1 567359..567946(-) (ssb) [Aeromonas veronii strain HD6454]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
SMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=589788 KW556_RS02755 WP_069529269.1 567359..567946(-) (ssb) [Aeromonas veronii strain HD6454]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGAGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCAGCTCCGCAGCAG
AGCATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.368

98.974

0.528
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456