Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KW556_RS01830 Genome accession   NZ_CP079823
Coordinates   379555..380994 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain HD6454     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374555..385994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW556_RS01800 (KW556_01785) mlaF 375132..375932 (-) 801 WP_129503137.1 phospholipid ABC transporter ATP-binding protein MlaF -
  KW556_RS01805 (KW556_01790) - 376140..377135 (+) 996 WP_058057518.1 KpsF/GutQ family sugar-phosphate isomerase -
  KW556_RS01810 (KW556_01795) kdsC 377135..377689 (+) 555 WP_259584607.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  KW556_RS01815 (KW556_01800) lptC 377686..378246 (+) 561 WP_019444847.1 LPS export ABC transporter periplasmic protein LptC -
  KW556_RS01820 (KW556_01805) lptA 378233..378760 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  KW556_RS01825 (KW556_01810) lptB 378764..379489 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  KW556_RS01830 (KW556_01815) rpoN/rpoN1 379555..380994 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  KW556_RS01835 (KW556_01820) hpf 381015..381302 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  KW556_RS01840 (KW556_01825) ptsN 381305..381751 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KW556_RS01845 (KW556_01830) rapZ 381797..382663 (+) 867 WP_259584608.1 RNase adapter RapZ -
  KW556_RS01850 (KW556_01835) npr 382684..382956 (+) 273 WP_231720003.1 PTS phosphocarrier protein NPr -
  KW556_RS01855 (KW556_01840) - 382974..384878 (-) 1905 WP_259584609.1 transcription antiterminator -
  KW556_RS01860 (KW556_01845) - 384986..385726 (-) 741 WP_259584610.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=589784 KW556_RS01830 WP_005336331.1 379555..380994(+) (rpoN/rpoN1) [Aeromonas veronii strain HD6454]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=589784 KW556_RS01830 WP_005336331.1 379555..380994(+) (rpoN/rpoN1) [Aeromonas veronii strain HD6454]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGAGAGACCACCGAAAACCTGCAGGATTATCTGTTGTGGCAGATGCGACTCACACCGTTTA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCAGTCACCAGCGATGACGTAGAGGTGGAGCTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTCATCCAGCTGGATCAGTATGACCCGCAGACCCCTT
GGCTCAACGAGGCCAAGGAGGTGATCCTTGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGTCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATTCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCCATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTAACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491