Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   LPB404_RS06935 Genome accession   NZ_CP079821
Coordinates   1385070..1385363 (-) Length   97 a.a.
NCBI ID   WP_021144391.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380070..1390363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS06915 (LPB404_06915) - 1380775..1381470 (+) 696 WP_219074431.1 VIT family protein -
  LPB404_RS06920 (LPB404_06920) - 1381759..1382298 (-) 540 WP_123160439.1 NADPH-dependent FMN reductase -
  LPB404_RS06925 (LPB404_06925) - 1382446..1383297 (-) 852 WP_120701790.1 VOC family protein -
  LPB404_RS06930 (LPB404_06930) - 1383447..1385048 (-) 1602 WP_219074432.1 type I restriction-modification system subunit M -
  LPB404_RS06935 (LPB404_06935) HI0659 1385070..1385363 (-) 294 WP_021144391.1 helix-turn-helix domain-containing protein Machinery gene
  LPB404_RS06940 (LPB404_06940) - 1385353..1385717 (-) 365 Protein_1324 type II toxin-antitoxin system RelE/ParE family toxin -
  LPB404_RS06945 (LPB404_06945) - 1385881..1387101 (-) 1221 WP_219074433.1 restriction endonuclease subunit S -
  LPB404_RS06950 (LPB404_06950) - 1387117..1387659 (-) 543 WP_219074434.1 hypothetical protein -
  LPB404_RS06955 (LPB404_06955) - 1387683..1388687 (-) 1005 WP_219074435.1 DUF6731 family protein -
  LPB404_RS06960 (LPB404_06960) - 1388704..1389363 (-) 660 WP_219074436.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10730.48 Da        Isoelectric Point: 5.8962

>NTDB_id=589767 LPB404_RS06935 WP_021144391.1 1385070..1385363(-) (HI0659) [Streptococcus rubneri strain LPB0404]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=589767 LPB404_RS06935 WP_021144391.1 1385070..1385363(-) (HI0659) [Streptococcus rubneri strain LPB0404]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TCTGCGGGTCGCGATTATGACAGAGCTGATCGAAGCTCGGCATGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTTA
GTGGGGTCAGCCAACCGGTCATTGCTCGGATGGAGACGGGAAAGACCAGTCCTCAATTGGATACGGTCTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTCCCACTGGAACAAGAAAAGGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567