Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LPB404_RS02945 Genome accession   NZ_CP079821
Coordinates   579623..580354 (+) Length   243 a.a.
NCBI ID   WP_195348289.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 574623..585354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS02915 (LPB404_02915) - 575079..576500 (+) 1422 WP_219074996.1 NCS2 family permease -
  LPB404_RS02920 (LPB404_02920) tsaE 576624..577073 (+) 450 WP_042361452.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LPB404_RS02925 (LPB404_02925) - 577076..577609 (+) 534 WP_023022268.1 GNAT family N-acetyltransferase -
  LPB404_RS02930 (LPB404_02930) - 577606..578775 (+) 1170 WP_023022270.1 LCP family protein -
  LPB404_RS02935 (LPB404_02935) - 578835..579128 (-) 294 WP_023022273.1 hypothetical protein -
  LPB404_RS02940 (LPB404_02940) - 579142..579555 (-) 414 WP_023027711.1 HIT family protein -
  LPB404_RS02945 (LPB404_02945) pptA 579623..580354 (+) 732 WP_195348289.1 ABC transporter ATP-binding protein Regulator
  LPB404_RS02950 (LPB404_02950) - 580351..581406 (+) 1056 WP_023027713.1 ABC transporter permease -
  LPB404_RS02955 (LPB404_02955) ccrZ 581447..582241 (+) 795 WP_195214380.1 cell cycle regulator CcrZ -
  LPB404_RS02960 (LPB404_02960) trmB 582238..582873 (+) 636 WP_195348290.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  LPB404_RS02965 (LPB404_02965) rimP 583195..583683 (+) 489 WP_081698240.1 ribosome maturation factor RimP -
  LPB404_RS02970 (LPB404_02970) nusA 583729..584874 (+) 1146 WP_006596880.1 transcription termination factor NusA -
  LPB404_RS02975 (LPB404_02975) rnpM 584885..585181 (+) 297 WP_006596879.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26984.38 Da        Isoelectric Point: 4.7232

>NTDB_id=589747 LPB404_RS02945 WP_195348289.1 579623..580354(+) (pptA) [Streptococcus rubneri strain LPB0404]
MLEIKNLTGGYVNIPVLKDVSFEVGDGQLIGLIGLNGAGKSTTINEIIGLLRPYAGEIRIDGLTLVASPSAYRKKIGYIP
ETPSLYEELTLREHIETVAMAYDLDQEAVFARVTPLLKQFRLEEKLDWFPVHFSKGMKQKVMIICAFAVDPSLFIVDEPF
LGLDPVAISDLIQLLNAEKEKGKSILMSTHVLDSAEKMCDAFVILHKGQVRAQGTLEELRKEFGMADADLNEIYLALTKE
ADR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=589747 LPB404_RS02945 WP_195348289.1 579623..580354(+) (pptA) [Streptococcus rubneri strain LPB0404]
ATGTTAGAAATAAAAAACCTGACAGGAGGCTATGTCAATATCCCTGTCTTAAAAGATGTTAGTTTTGAGGTTGGCGATGG
TCAATTGATTGGATTGATTGGCTTGAATGGAGCAGGAAAGTCAACGACCATTAATGAAATTATAGGTCTCCTGCGTCCCT
ATGCTGGTGAAATCCGGATTGATGGCTTGACTCTAGTGGCTTCTCCAAGTGCTTATCGCAAAAAAATTGGTTATATCCCA
GAAACCCCTAGCCTTTATGAAGAGTTAACCTTACGTGAGCATATTGAGACAGTAGCTATGGCCTATGATTTGGATCAAGA
AGCTGTTTTTGCGCGTGTGACTCCTCTCCTGAAGCAATTTCGACTAGAGGAAAAATTGGATTGGTTTCCTGTCCATTTTT
CTAAGGGGATGAAACAAAAGGTCATGATCATTTGTGCCTTTGCTGTTGATCCAAGTTTGTTTATTGTGGATGAGCCCTTT
TTAGGCTTAGATCCAGTTGCAATCTCAGATTTAATTCAACTATTGAATGCAGAGAAAGAAAAAGGAAAATCTATTTTAAT
GAGTACCCATGTTCTGGATTCTGCTGAAAAAATGTGTGATGCCTTTGTCATCCTCCATAAGGGACAGGTCCGTGCCCAGG
GGACTTTAGAGGAATTGCGAAAAGAGTTTGGAATGGCAGATGCGGATTTGAATGAGATTTACCTTGCACTAACAAAAGAG
GCTGACCGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.732

98.354

0.745
  pptA Streptococcus thermophilus LMD-9

74.895

98.354

0.737