Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | LPB404_RS00225 | Genome accession | NZ_CP079821 |
| Coordinates | 43165..45594 (-) | Length | 809 a.a. |
| NCBI ID | WP_219074741.1 | Uniprot ID | - |
| Organism | Streptococcus rubneri strain LPB0404 | ||
| Function | degradation of ComW (predicted from homology) Competence regulation |
||
Genomic Context
Location: 38165..50594
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPB404_RS00195 (LPB404_00195) | - | 38522..39319 (-) | 798 | WP_219074735.1 | NUDIX domain-containing protein | - |
| LPB404_RS00200 (LPB404_00200) | pnuC | 39320..40102 (-) | 783 | WP_219074736.1 | nicotinamide riboside transporter PnuC | - |
| LPB404_RS00205 (LPB404_00205) | - | 40115..41173 (-) | 1059 | WP_219074737.1 | AAA family ATPase | - |
| LPB404_RS00210 (LPB404_00210) | - | 41375..42118 (-) | 744 | WP_219074738.1 | hypothetical protein | - |
| LPB404_RS00215 (LPB404_00215) | - | 42280..42684 (-) | 405 | WP_219074739.1 | DUF4430 domain-containing protein | - |
| LPB404_RS00220 (LPB404_00220) | - | 42665..43153 (-) | 489 | WP_219074740.1 | ECF transporter S component | - |
| LPB404_RS00225 (LPB404_00225) | clpC | 43165..45594 (-) | 2430 | WP_219074741.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| LPB404_RS00230 (LPB404_00230) | - | 45602..46060 (-) | 459 | WP_219074742.1 | CtsR family transcriptional regulator | - |
| LPB404_RS00235 (LPB404_00235) | - | 46280..49771 (-) | 3492 | WP_219074743.1 | alpha-L-fucosidase | - |
Sequence
Protein
Download Length: 809 a.a. Molecular weight: 89854.40 Da Isoelectric Point: 5.7721
>NTDB_id=589716 LPB404_RS00225 WP_219074741.1 43165..45594(-) (clpC) [Streptococcus rubneri strain LPB0404]
MNYSKALLETIEAAQILAGHFDSQTLDTWHILVALANNPYSVAGSVLSDYPMQIDDFQDAAEHITGQVYQRDGRYEVFPF
SFRVEEIMNRSQEIAQAVHAKSLGTEHVLLALLLERGTLASQVLEYVGFRYDDQEDGIKIVELRKSLEQRAGWDKEAVKA
IRSLYRSQQPNRQTMGNMMGMPASTSGGLEDYTRDLTEMARNGSLEPVIGRGQEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIASGDVPTELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEEDGHVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVLIEQPSVADSIAILQGLKKTYERHHRVHITDAAIET
AVVYAHRYLTSRLLPDSAIDLLDEAAATVQNEGPQAGLQSDLTAADQALLKGQWKKVAQLLKEDASPKGYQLEVKEEDIL
KTLSQLSGIPVEKLTQTAAKKYLELEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFLFLGPTGVGKTELAKA
LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQANMEKRIFEELKKTYRPEFINRIDEKVVFHSLTSD
QMHEIVKIMVKPLVQSLAEKGITLKFQASALKWLATHGYDPEMGARPLRRTIQTQVEDHLAEILLRGEVAEGQTLKVGVK
SGQLNFTID
MNYSKALLETIEAAQILAGHFDSQTLDTWHILVALANNPYSVAGSVLSDYPMQIDDFQDAAEHITGQVYQRDGRYEVFPF
SFRVEEIMNRSQEIAQAVHAKSLGTEHVLLALLLERGTLASQVLEYVGFRYDDQEDGIKIVELRKSLEQRAGWDKEAVKA
IRSLYRSQQPNRQTMGNMMGMPASTSGGLEDYTRDLTEMARNGSLEPVIGRGQEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIASGDVPTELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEEDGHVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVLIEQPSVADSIAILQGLKKTYERHHRVHITDAAIET
AVVYAHRYLTSRLLPDSAIDLLDEAAATVQNEGPQAGLQSDLTAADQALLKGQWKKVAQLLKEDASPKGYQLEVKEEDIL
KTLSQLSGIPVEKLTQTAAKKYLELEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFLFLGPTGVGKTELAKA
LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQANMEKRIFEELKKTYRPEFINRIDEKVVFHSLTSD
QMHEIVKIMVKPLVQSLAEKGITLKFQASALKWLATHGYDPEMGARPLRRTIQTQVEDHLAEILLRGEVAEGQTLKVGVK
SGQLNFTID
Nucleotide
Download Length: 2430 bp
>NTDB_id=589716 LPB404_RS00225 WP_219074741.1 43165..45594(-) (clpC) [Streptococcus rubneri strain LPB0404]
ATGAACTATTCAAAAGCCCTATTAGAAACGATTGAAGCCGCTCAAATCTTGGCGGGTCATTTTGATTCCCAAACCCTAGA
TACCTGGCATATCCTAGTGGCCCTAGCAAATAACCCCTATAGTGTAGCTGGTTCCGTCTTAAGTGACTATCCTATGCAGA
TTGATGATTTTCAAGATGCAGCTGAGCACATCACGGGCCAAGTCTACCAACGGGATGGTCGCTATGAGGTATTTCCTTTT
TCTTTCCGTGTAGAAGAAATCATGAACCGTTCCCAAGAGATTGCCCAGGCAGTCCATGCCAAAAGTCTTGGAACAGAGCA
TGTCCTCTTGGCGCTCTTACTAGAGCGGGGAACCTTAGCTTCTCAAGTATTGGAGTATGTTGGCTTCCGCTATGATGATC
AGGAAGATGGCATTAAAATCGTCGAACTTCGTAAGAGTTTGGAACAACGAGCAGGTTGGGACAAGGAAGCTGTCAAGGCT
ATCCGTTCTCTCTATCGGTCCCAGCAACCAAATCGTCAAACCATGGGAAATATGATGGGCATGCCGGCCTCTACTAGTGG
TGGTTTGGAAGATTATACCCGAGATCTGACAGAAATGGCTCGCAATGGCAGTTTGGAACCGGTGATTGGCCGGGGTCAAG
AGATCTCGCGGATGATTCAGATTTTGAGCCGTAAAACAAAAAATAATCCAGTCCTCGTTGGAGATGCCGGTGTCGGAAAG
ACTGCTCTGGCTTTGGGCTTGGCTCAACGGATTGCCAGTGGAGATGTCCCAACTGAACTTGCGAAGATGCGTGTCTTAGA
GTTGGACTTGATGAATGTTGTCGCAGGGACTCGTTTCCGTGGAGATTTTGAAGAGCGGATGAACAACATCATCAATGATA
TTGAAGAAGATGGCCATGTCATCCTCTTCATTGATGAGCTCCATACCATTATGGGCTCTGGCTCTGGGATTGACTCCACC
TTGGATGCGGCCAATATCTTGAAGCCAGCCTTGGCCCGTGGAACCTTACGGACCGTAGGAGCGACTACGCAAGAAGAATA
CCAAAAACACATCGAAAAAGATGCCGCTCTGTCACGCCGTTTTGCCAAGGTTTTGATTGAGCAACCGTCTGTTGCGGATA
GCATCGCTATTTTGCAAGGGCTCAAGAAGACCTATGAGCGTCACCACCGTGTCCATATTACGGATGCAGCCATTGAGACA
GCCGTTGTCTATGCCCATCGTTATTTGACCAGTCGCCTCTTGCCAGACTCAGCCATTGATCTTTTGGATGAGGCGGCAGC
GACCGTGCAAAACGAGGGGCCTCAAGCAGGCCTTCAGTCCGATTTGACAGCTGCCGATCAGGCCTTGCTCAAGGGACAGT
GGAAAAAAGTTGCACAGTTACTAAAAGAAGACGCCAGTCCGAAAGGCTATCAGTTAGAAGTCAAGGAAGAGGATATTCTG
AAGACGCTCAGTCAGCTTTCTGGCATTCCTGTGGAGAAACTAACCCAAACAGCAGCTAAGAAATACCTTGAATTAGAAGC
GGAACTTCATAAGCGCGTGATCGGTCAGGATCAGGCTGTCTCAAGTATCAGTCGAGCGATTCGCCGCAATCAATCTGGAA
TCCGGTCTCACAAGCGACCAATTGGTTCCTTCCTCTTCCTCGGTCCGACAGGAGTCGGGAAAACCGAGCTAGCCAAGGCG
CTTGCTGAGGTCCTCTTTGATGACGAGTCCGCTTTGATTCGCTTTGATATGAGTGAATACATGGAGAAATTTGCGGCTAG
TCGACTCAACGGAGCTCCTCCGGGTTACGTTGGTTATGAAGAAGGTGGTGAGTTGACGGAAAAAGTCCGCAACAAACCTT
ATTCAGTCCTCTTGTTTGATGAGGTGGAAAAAGCCCATCCAGATATCTTTAACGTTCTCTTGCAGGTCTTGGATGACGGT
GTCTTGACCGACAGCAAGGGACGCAAGGTTGATTTCTCCAATACCATTATTATCATGACGTCAAACTTGGGAGCTACTGC
TTTACGAGATGATAAGACAGTCGGTTTTGGAGCCAAGGATATTCGCTTTGACCAAGCCAATATGGAAAAACGCATCTTCG
AAGAGTTGAAGAAGACTTATCGACCGGAGTTCATTAACCGGATTGATGAAAAGGTCGTCTTCCATAGCCTGACCAGTGAC
CAAATGCACGAGATTGTCAAGATTATGGTGAAACCGTTGGTTCAATCCCTAGCAGAGAAGGGCATTACTCTGAAATTCCA
GGCGTCTGCCCTTAAATGGCTGGCAACTCACGGATATGATCCAGAGATGGGAGCGCGTCCTTTGCGTCGGACCATCCAGA
CCCAGGTGGAAGACCACTTGGCAGAGATTCTCTTGAGAGGAGAAGTTGCAGAAGGTCAAACCCTCAAGGTAGGTGTCAAG
TCTGGTCAGCTTAACTTCACGATTGACTAG
ATGAACTATTCAAAAGCCCTATTAGAAACGATTGAAGCCGCTCAAATCTTGGCGGGTCATTTTGATTCCCAAACCCTAGA
TACCTGGCATATCCTAGTGGCCCTAGCAAATAACCCCTATAGTGTAGCTGGTTCCGTCTTAAGTGACTATCCTATGCAGA
TTGATGATTTTCAAGATGCAGCTGAGCACATCACGGGCCAAGTCTACCAACGGGATGGTCGCTATGAGGTATTTCCTTTT
TCTTTCCGTGTAGAAGAAATCATGAACCGTTCCCAAGAGATTGCCCAGGCAGTCCATGCCAAAAGTCTTGGAACAGAGCA
TGTCCTCTTGGCGCTCTTACTAGAGCGGGGAACCTTAGCTTCTCAAGTATTGGAGTATGTTGGCTTCCGCTATGATGATC
AGGAAGATGGCATTAAAATCGTCGAACTTCGTAAGAGTTTGGAACAACGAGCAGGTTGGGACAAGGAAGCTGTCAAGGCT
ATCCGTTCTCTCTATCGGTCCCAGCAACCAAATCGTCAAACCATGGGAAATATGATGGGCATGCCGGCCTCTACTAGTGG
TGGTTTGGAAGATTATACCCGAGATCTGACAGAAATGGCTCGCAATGGCAGTTTGGAACCGGTGATTGGCCGGGGTCAAG
AGATCTCGCGGATGATTCAGATTTTGAGCCGTAAAACAAAAAATAATCCAGTCCTCGTTGGAGATGCCGGTGTCGGAAAG
ACTGCTCTGGCTTTGGGCTTGGCTCAACGGATTGCCAGTGGAGATGTCCCAACTGAACTTGCGAAGATGCGTGTCTTAGA
GTTGGACTTGATGAATGTTGTCGCAGGGACTCGTTTCCGTGGAGATTTTGAAGAGCGGATGAACAACATCATCAATGATA
TTGAAGAAGATGGCCATGTCATCCTCTTCATTGATGAGCTCCATACCATTATGGGCTCTGGCTCTGGGATTGACTCCACC
TTGGATGCGGCCAATATCTTGAAGCCAGCCTTGGCCCGTGGAACCTTACGGACCGTAGGAGCGACTACGCAAGAAGAATA
CCAAAAACACATCGAAAAAGATGCCGCTCTGTCACGCCGTTTTGCCAAGGTTTTGATTGAGCAACCGTCTGTTGCGGATA
GCATCGCTATTTTGCAAGGGCTCAAGAAGACCTATGAGCGTCACCACCGTGTCCATATTACGGATGCAGCCATTGAGACA
GCCGTTGTCTATGCCCATCGTTATTTGACCAGTCGCCTCTTGCCAGACTCAGCCATTGATCTTTTGGATGAGGCGGCAGC
GACCGTGCAAAACGAGGGGCCTCAAGCAGGCCTTCAGTCCGATTTGACAGCTGCCGATCAGGCCTTGCTCAAGGGACAGT
GGAAAAAAGTTGCACAGTTACTAAAAGAAGACGCCAGTCCGAAAGGCTATCAGTTAGAAGTCAAGGAAGAGGATATTCTG
AAGACGCTCAGTCAGCTTTCTGGCATTCCTGTGGAGAAACTAACCCAAACAGCAGCTAAGAAATACCTTGAATTAGAAGC
GGAACTTCATAAGCGCGTGATCGGTCAGGATCAGGCTGTCTCAAGTATCAGTCGAGCGATTCGCCGCAATCAATCTGGAA
TCCGGTCTCACAAGCGACCAATTGGTTCCTTCCTCTTCCTCGGTCCGACAGGAGTCGGGAAAACCGAGCTAGCCAAGGCG
CTTGCTGAGGTCCTCTTTGATGACGAGTCCGCTTTGATTCGCTTTGATATGAGTGAATACATGGAGAAATTTGCGGCTAG
TCGACTCAACGGAGCTCCTCCGGGTTACGTTGGTTATGAAGAAGGTGGTGAGTTGACGGAAAAAGTCCGCAACAAACCTT
ATTCAGTCCTCTTGTTTGATGAGGTGGAAAAAGCCCATCCAGATATCTTTAACGTTCTCTTGCAGGTCTTGGATGACGGT
GTCTTGACCGACAGCAAGGGACGCAAGGTTGATTTCTCCAATACCATTATTATCATGACGTCAAACTTGGGAGCTACTGC
TTTACGAGATGATAAGACAGTCGGTTTTGGAGCCAAGGATATTCGCTTTGACCAAGCCAATATGGAAAAACGCATCTTCG
AAGAGTTGAAGAAGACTTATCGACCGGAGTTCATTAACCGGATTGATGAAAAGGTCGTCTTCCATAGCCTGACCAGTGAC
CAAATGCACGAGATTGTCAAGATTATGGTGAAACCGTTGGTTCAATCCCTAGCAGAGAAGGGCATTACTCTGAAATTCCA
GGCGTCTGCCCTTAAATGGCTGGCAACTCACGGATATGATCCAGAGATGGGAGCGCGTCCTTTGCGTCGGACCATCCAGA
CCCAGGTGGAAGACCACTTGGCAGAGATTCTCTTGAGAGGAGAAGTTGCAGAAGGTCAAACCCTCAAGGTAGGTGTCAAG
TCTGGTCAGCTTAACTTCACGATTGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus pneumoniae Rx1 |
76.761 |
100 |
0.768 |
| clpC | Streptococcus pneumoniae D39 |
76.761 |
100 |
0.768 |
| clpC | Streptococcus pneumoniae TIGR4 |
76.761 |
100 |
0.768 |
| clpC | Streptococcus mutans UA159 |
66.502 |
100 |
0.667 |
| clpC | Streptococcus thermophilus LMD-9 |
65.239 |
100 |
0.659 |
| clpC | Streptococcus thermophilus LMG 18311 |
65.239 |
100 |
0.659 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
48.798 |
100 |
0.502 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
45.644 |
100 |
0.46 |
| clpE | Streptococcus mutans UA159 |
48.47 |
76.761 |
0.372 |
| clpE | Streptococcus pneumoniae Rx1 |
47.352 |
77.009 |
0.365 |
| clpE | Streptococcus pneumoniae D39 |
47.352 |
77.009 |
0.365 |
| clpE | Streptococcus pneumoniae R6 |
47.352 |
77.009 |
0.365 |
| clpE | Streptococcus pneumoniae TIGR4 |
47.352 |
77.009 |
0.365 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
45.568 |
79.481 |
0.362 |