Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPB404_RS00035 Genome accession   NZ_CP079821
Coordinates   6144..7505 (-) Length   453 a.a.
NCBI ID   WP_219075196.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1144..12505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS09830 - 2391..2642 (-) 252 WP_257573029.1 hypothetical protein -
  LPB404_RS09835 - 2618..3379 (-) 762 WP_257573030.1 DUF2079 domain-containing protein -
  LPB404_RS09840 - 3388..3804 (-) 417 WP_257573031.1 DUF2079 domain-containing protein -
  LPB404_RS00020 (LPB404_00020) - 4217..4402 (-) 186 WP_219074727.1 hypothetical protein -
  LPB404_RS00025 (LPB404_00025) - 4580..5077 (-) 498 WP_219074719.1 carbonic anhydrase -
  LPB404_RS00030 (LPB404_00030) - 5367..6056 (-) 690 WP_219075195.1 TIGR00266 family protein -
  LPB404_RS00035 (LPB404_00035) radA 6144..7505 (-) 1362 WP_219075196.1 DNA repair protein RadA Machinery gene
  LPB404_RS00040 (LPB404_00040) - 7519..8034 (-) 516 WP_219074721.1 histidine phosphatase family protein -
  LPB404_RS00045 (LPB404_00045) - 8053..8508 (-) 456 WP_125335029.1 isochorismatase family protein -
  LPB404_RS00050 (LPB404_00050) - 8518..8964 (-) 447 WP_023919767.1 dUTP diphosphatase -
  LPB404_RS00055 (LPB404_00055) - 9202..9891 (-) 690 WP_048716619.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  LPB404_RS00060 (LPB404_00060) - 10094..11110 (+) 1017 WP_048691428.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  LPB404_RS00065 (LPB404_00065) galU 11172..12071 (+) 900 WP_219074722.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49335.86 Da        Isoelectric Point: 6.3722

>NTDB_id=589715 LPB404_RS00035 WP_219075196.1 6144..7505(-) (radA) [Streptococcus rubneri strain LPB0404]
MAKKKTTFICQNCAYNSPKYLGRCPNCGSWSSFVEEVEVTEIKNARVSLTGEKIKPMKLADVTSINVHRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPNFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLQGIAIPDGIQVIAVSTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=589715 LPB404_RS00035 WP_219075196.1 6144..7505(-) (radA) [Streptococcus rubneri strain LPB0404]
ATCGCTAAGAAAAAAACGACATTTATTTGTCAAAATTGTGCCTACAATTCACCCAAGTATCTAGGGCGCTGTCCTAACTG
TGGTTCTTGGTCTTCTTTTGTCGAGGAAGTTGAGGTCACCGAGATTAAGAATGCACGGGTGTCCTTGACAGGTGAAAAGA
TCAAACCCATGAAATTGGCGGACGTGACCTCTATCAATGTTCACCGGACCAAGACGGAGATGGAGGAATTCAATCGCGTC
CTTGGTGGAGGAGTGGTCCCAGGGAGTCTCGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTGCTCTTACA
AGTTTCAACCCAGCTGTCTCAAGTGGGGACTGTTCTCTATGTCAGTGGTGAAGAGTCTGCTCAGCAAATCAAACTCCGGG
CAGAGCGCTTGGGGGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTACGGGCAGAGGTGGAG
CGCATCCAACCTAACTTTCTCATTATCGACTCCATTCAGACTATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
CTCTCAGGTGCGTGAGGTGACAGCTGAACTTATGCAGCTGGCTAAGACTAATAACATTGCTATCTTTATCGTCGGCCATG
TGACTAAGGAAGGGACCTTGGCAGGACCTCGGATGCTGGAGCATATGGTGGATACGGTGCTCTACTTTGAGGGCGAGCGC
CACCACACCTTCCGGATCCTGAGAGCGGTCAAGAACCGCTTTGGCTCCACCAATGAGATTGGGATTTTCGAGATGCAGTC
AGGCGGACTGGTTGAGGTCCTCAATCCCAGTCAGGTCTTTCTAGAAGAACGCTTGGATGGGGCGACTGGTTCTGCCATTG
TCGTCACCATGGAAGGAAGTAGACCAATCCTGGCGGAAGTTCAAGCCTTGGTGACACCAACTGTATTTGGAAATGCCAAG
CGGACGACAACGGGTCTTGACTTTAACCGGGTTAGCCTCATTATGGCTGTGTTAGAGAAACGTTGCGGGCTCCTTCTTCA
AAATCAAGATGCCTATCTCAAGTCAGCTGGTGGTGTCAAACTGGACGAACCAGCTATTGACCTAGCCGTAGCGGTGGCTA
TTGCTTCCAGCTACAAGGAGCTTCCAACCAATCCGCAAGAGGCTTTTATCGGTGAGATTGGCTTGACTGGCGAGATTCGC
CGAGTGACTCGGATCGAGCAACGGATCAACGAAGCGGCGAAACTTGGTTTTACTAAGATTTATGCACCAAAAAATTCTCT
CCAAGGGATTGCGATCCCAGACGGCATTCAAGTGATAGCAGTCTCCACGGTAGGGGAAGTTTTGAAAAAGGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

93.157

100

0.932
  radA Streptococcus pneumoniae D39

93.157

100

0.932
  radA Streptococcus pneumoniae R6

93.157

100

0.932
  radA Streptococcus pneumoniae TIGR4

93.157

100

0.932
  radA Streptococcus mitis SK321

93.157

100

0.932
  radA Streptococcus mitis NCTC 12261

92.936

100

0.929
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

100

0.625