Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   LPB402_RS10470 Genome accession   NZ_CP079820
Coordinates   2185234..2186382 (+) Length   382 a.a.
NCBI ID   WP_219088728.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 2180234..2191382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS10435 (LPB402_10440) - 2180492..2181091 (+) 600 WP_219088736.1 Maf family protein -
  LPB402_RS10440 (LPB402_10445) rsmA 2181180..2181959 (+) 780 WP_107791931.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  LPB402_RS11125 - 2182060..2182209 (+) 150 WP_225905470.1 hypothetical protein -
  LPB402_RS10450 (LPB402_10455) - 2182290..2183018 (+) 729 WP_219088733.1 amino acid ABC transporter ATP-binding protein -
  LPB402_RS10455 (LPB402_10460) - 2183082..2183441 (+) 360 WP_036490466.1 hypothetical protein -
  LPB402_RS10460 (LPB402_10465) - 2183446..2183898 (+) 453 WP_219088731.1 protein YgfX -
  LPB402_RS10465 (LPB402_10470) folC 2183937..2185220 (+) 1284 WP_219088729.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  LPB402_RS10470 (LPB402_10475) tpc 2185234..2186382 (+) 1149 WP_219088728.1 SPOR domain-containing protein Machinery gene
  LPB402_RS10475 (LPB402_10480) - 2186375..2186908 (+) 534 WP_107791926.1 CvpA family protein -
  LPB402_RS10480 (LPB402_10485) purF 2187061..2188605 (+) 1545 WP_219088726.1 amidophosphoribosyltransferase -
  LPB402_RS10485 (LPB402_10490) greB 2188680..2189171 (+) 492 WP_070459900.1 transcription elongation factor GreB -
  LPB402_RS10490 (LPB402_10495) plsY 2189259..2189870 (-) 612 WP_070459903.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  LPB402_RS10495 (LPB402_10500) folB 2189928..2190278 (+) 351 WP_070459906.1 dihydroneopterin aldolase -
  LPB402_RS10500 (LPB402_10505) - 2190352..2190888 (+) 537 WP_070459909.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41797.79 Da        Isoelectric Point: 9.9754

>NTDB_id=589712 LPB402_RS10470 WP_219088728.1 2185234..2186382(+) (tpc) [Neisseria sicca ATCC 29256]
MSDNKQKETPNGYDLDGYERLKRRNRRRLVLASGLVVASGMLFGLALTSGDDKNSPFKEAPVGQSQAKTADEPSKAVVLE
PNKEDVAAAEEAARHADAEAPNKPQNAGDEEDNAPVEVLKPNRESAPEDVGEPLVLINDTLDDGNIKGLEESERIQRAEA
AKREAAERRAEERRQRQAEQRAAAARKTQAQQETAEKENALAAKKRVLQARAEKAEREAAAERNKLAQLEKAEKAIAERK
SAKNSKDSVKDKAEPAKKAEAKVEKPKNEKAKPETAKAEKADKVKTAEKPSEKAKPKAEKETAEAKPAKKAAIQAGYAEK
ERAQSLQRKMKAAGIDSTITEVMTDKGKVYRVKSASYKNARDAERDLNKLRVHGIAGQVTSE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=589712 LPB402_RS10470 WP_219088728.1 2185234..2186382(+) (tpc) [Neisseria sicca ATCC 29256]
ATGTCCGACAATAAACAAAAAGAAACTCCAAACGGATACGATTTAGACGGTTACGAACGACTCAAACGTCGCAACCGCCG
TCGCTTGGTCTTGGCCTCCGGCTTGGTGGTGGCATCGGGTATGCTGTTCGGTCTGGCGCTGACTTCCGGCGACGATAAAA
ATTCACCGTTTAAAGAAGCGCCTGTCGGTCAGAGCCAAGCCAAAACGGCTGACGAGCCGAGCAAGGCGGTTGTTTTAGAG
CCTAATAAAGAGGATGTCGCTGCTGCTGAAGAGGCTGCCCGCCATGCGGATGCCGAAGCACCAAATAAACCGCAAAATGC
AGGCGACGAAGAAGACAATGCGCCGGTTGAAGTATTGAAGCCAAACCGCGAATCTGCTCCCGAAGATGTTGGCGAGCCGT
TGGTTTTGATCAACGATACTTTAGATGACGGCAATATCAAAGGCTTGGAAGAGTCCGAACGTATTCAACGTGCCGAGGCT
GCCAAACGTGAAGCTGCAGAGCGCCGAGCCGAAGAACGCCGCCAACGTCAGGCTGAACAACGTGCTGCTGCGGCCCGTAA
AACACAAGCCCAACAGGAAACAGCAGAGAAAGAAAACGCATTGGCAGCTAAAAAACGCGTACTTCAAGCGCGTGCTGAAA
AAGCAGAGCGTGAAGCCGCTGCAGAACGCAATAAATTGGCACAATTGGAAAAAGCAGAGAAAGCCATTGCCGAGCGTAAA
TCTGCCAAAAACAGCAAAGACAGCGTAAAAGACAAGGCCGAACCTGCTAAGAAAGCAGAAGCCAAAGTTGAAAAACCAAA
AAATGAAAAAGCTAAACCAGAAACGGCCAAAGCAGAAAAAGCCGATAAGGTAAAAACTGCCGAGAAGCCGTCTGAAAAAG
CCAAGCCTAAAGCTGAAAAAGAAACAGCAGAAGCCAAGCCTGCGAAAAAAGCTGCCATTCAGGCTGGTTATGCTGAAAAA
GAACGTGCGCAAAGCCTGCAACGTAAAATGAAAGCCGCAGGTATCGACTCGACCATTACTGAAGTGATGACCGATAAAGG
TAAGGTGTATCGCGTGAAATCAGCCAGTTATAAAAATGCACGCGATGCCGAGCGCGATTTGAACAAATTGCGTGTACATG
GCATTGCCGGTCAGGTGACCAGTGAGTAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(309-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

49.495

100

0.513