Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LPB402_RS06225 Genome accession   NZ_CP079820
Coordinates   1325460..1326992 (-) Length   510 a.a.
NCBI ID   WP_219089201.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320460..1331992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS06205 (LPB402_06210) - 1321173..1322093 (+) 921 WP_219089206.1 patatin-like phospholipase family protein -
  LPB402_RS06210 (LPB402_06215) - 1322202..1324058 (+) 1857 WP_219089205.1 ribonuclease catalytic domain-containing protein -
  LPB402_RS06215 (LPB402_06220) - 1324195..1324422 (+) 228 WP_003681131.1 exodeoxyribonuclease VII small subunit -
  LPB402_RS06220 (LPB402_06225) - 1324406..1325302 (+) 897 WP_219089203.1 polyprenyl synthetase family protein -
  LPB402_RS06225 (LPB402_06230) pilA 1325460..1326992 (-) 1533 WP_219089201.1 signal recognition particle-docking protein FtsY Machinery gene
  LPB402_RS06230 (LPB402_06235) msrAB 1327138..1328706 (+) 1569 WP_219089198.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  LPB402_RS06235 (LPB402_06240) purB 1328836..1330206 (-) 1371 WP_219089196.1 adenylosuccinate lyase -
  LPB402_RS06240 (LPB402_06245) - 1330417..1330857 (+) 441 WP_107792289.1 surface-adhesin E family protein -
  LPB402_RS06245 (LPB402_06250) - 1331243..1331812 (-) 570 WP_070461562.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54758.88 Da        Isoelectric Point: 4.2446

>NTDB_id=589696 LPB402_RS06225 WP_219089201.1 1325460..1326992(-) (pilA) [Neisseria sicca ATCC 29256]
MFSFFRRKKKQETPAPEEAQVQETAAKVESEVAQVVENIKEDAESLAESVKGHVESVVELAVETVSETVEQVREALTETP
SETVEKVEEHVEAAKEAAVETVSEAVDQVKETVAEMPSEVAEVAEEVAEQAEAVKEAAVETVNEAVEQVKETVAEMPSEV
AEAAEEAVEQAEAVKEEAVEAVSEAVEQVQEAVAETPVEAPAPAEEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=589696 LPB402_RS06225 WP_219089201.1 1325460..1326992(-) (pilA) [Neisseria sicca ATCC 29256]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAGTTCAGGAAACTGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAGCAGAAAGCGTCAAAGGGCATG
TTGAATCAGTTGTCGAATTGGCTGTTGAAACCGTTAGCGAAACCGTCGAGCAGGTTCGAGAAGCTTTAACCGAAACGCCG
TCTGAAACAGTTGAGAAAGTAGAAGAACACGTTGAAGCGGCAAAAGAAGCGGCCGTTGAAACCGTCAGCGAGGCTGTTGA
TCAGGTAAAGGAAACTGTTGCCGAGATGCCGTCTGAAGTGGCCGAGGTTGCTGAAGAAGTAGCGGAACAGGCTGAAGCGG
TAAAAGAAGCGGCCGTTGAAACCGTCAACGAGGCTGTTGAGCAGGTAAAGGAAACTGTTGCCGAAATGCCGTCTGAAGTG
GCCGAGGCTGCTGAGGAAGCAGTAGAACAGGCCGAAGCGGTAAAAGAAGAAGCTGTTGAGGCAGTTAGCGAAGCTGTTGA
GCAAGTTCAAGAAGCCGTTGCGGAAACACCGGTTGAAGCTCCTGCTCCGGCAGAAGAACACAAGCTCAGTTGGGCTGCGC
GTTTGAAACAAGGCTTGACCAAATCACGCGACAAAATGGCAAAATCGTTGGCCGGCGTGTTCGGCGGCGGACAGATCGAC
GAGGATCTGTACGAAGAGCTGGAAACCGTGCTGATTACCAGCGATATGGGCATGGAAGCCACCGAATACTTGATGAAAGA
CGTGCGCGACCGTGTCAGCCTCAAAGGCCTCAAAGACGGCAACGAATTGCGCGGCGCGCTGAAGGATGCGTTGTACGACT
TGATTAAGCCTCTGGAGAAACCTTTGGTCTTGCCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGC
GCAGGCAAAACCACTTCTATCGGCAAACTGGCTAAATATTTCCAAGCCCAGGGAAAATCTGTATTGCTGGCGGCAGGCGA
TACTTTCCGTGCCGCCGCGCGTGAGCAGCTTCAGGCTTGGGGTGAGCGCAATAATGTGACCGTGATTTCGCAAACTACGG
GCGATTCCGCTGCCGTTTGCTTCGATGCCGTCCAAGCCGCGAAAGCGCGTGGGATCGATATCGTGCTGGCCGATACTGCC
GGCCGCCTGCCGACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGTTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATCGTCGTGCTTGATGCCAACATCGGTCAAAACGCTGTCAACCAAGTGAAAGCCTTTGATGAAGCAC
TGGGTCTGACCGGCCTGATCGTGACCAAGCTAGACGGTACGGCCAAAGGCGGTATCCTTGCCGCGCTTGCCTCTGACCGC
CCTGTTCCTGTCCGCTACATCGGCGTAGGCGAAGGCATCGACGATTTGCGTCCGTTTAATGCCAAAGCGTTCGTAGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

85.366

80.392

0.686