Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LPB402_RS03535 Genome accession   NZ_CP079820
Coordinates   734247..734708 (+) Length   153 a.a.
NCBI ID   WP_219089564.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 729247..739708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS03510 (LPB402_03515) - 729348..730016 (-) 669 WP_107792404.1 DUF3108 domain-containing protein -
  LPB402_RS03515 (LPB402_03520) purN 730047..730673 (-) 627 WP_107792403.1 phosphoribosylglycinamide formyltransferase -
  LPB402_RS03520 (LPB402_03525) - 730770..731585 (-) 816 WP_219089566.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  LPB402_RS03525 (LPB402_03530) - 731746..733011 (-) 1266 WP_039861976.1 Glu/Leu/Phe/Val family dehydrogenase -
  LPB402_RS03530 (LPB402_03535) - 733433..734146 (+) 714 WP_070461395.1 phosphoglycolate phosphatase -
  LPB402_RS03535 (LPB402_03540) recX 734247..734708 (+) 462 WP_219089564.1 recombination regulator RecX Regulator
  LPB402_RS03540 (LPB402_03545) - 734784..734945 (+) 162 WP_039861975.1 hypothetical protein -
  LPB402_RS03545 (LPB402_03550) - 735066..737222 (-) 2157 WP_219089562.1 RelA/SpoT family protein -
  LPB402_RS03550 (LPB402_03555) rpoZ 737327..737533 (-) 207 WP_003682294.1 DNA-directed RNA polymerase subunit omega -
  LPB402_RS03555 (LPB402_03560) gmk 737586..738203 (-) 618 WP_070607926.1 guanylate kinase -
  LPB402_RS03560 (LPB402_03565) - 738372..738932 (+) 561 WP_219089560.1 adenine phosphoribosyltransferase -
  LPB402_RS03565 (LPB402_03570) - 738979..739668 (-) 690 WP_225905505.1 toxin-antitoxin system YwqK family antitoxin -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17846.08 Da        Isoelectric Point: 8.8080

>NTDB_id=589683 LPB402_RS03535 WP_219089564.1 734247..734708(+) (recX) [Neisseria sicca ATCC 29256]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGIDADDCREFLPGREDELQTAISVLRKKFKQEAQDLKEKQKQARFLAYRGFGADTIQTALKTAWNEDENFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=589683 LPB402_RS03535 WP_219089564.1 734247..734708(+) (recX) [Neisseria sicca ATCC 29256]
ATGAAACCTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCCCGTCAGGAAGTCAGCCGTGTCGGCTTGAAACG
CAAACTGGCTCCCCACGCTGAAAGCGAAGAAGAGTTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCAGAAGCCTATATTCACAGCAAGAGCAACCGTTACGGCACGCTCCGCCTCAAGCAAGCCTTGGCGCAA
CAAGGTATCGATGCAGATGACTGTCGGGAGTTCCTACCCGGCAGGGAGGACGAGCTGCAAACCGCCATTTCCGTCTTGCG
TAAAAAATTCAAGCAGGAAGCTCAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCCTATCGCGGCTTTGGTG
CCGACACCATTCAGACGGCCTTAAAAACCGCGTGGAATGAAGACGAAAACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

77.703

96.732

0.752