Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   LPB402_RS00470 Genome accession   NZ_CP079820
Coordinates   91031..92794 (+) Length   587 a.a.
NCBI ID   WP_107792034.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 86031..97794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS00450 (LPB402_00450) recR 87802..88407 (+) 606 WP_049348472.1 recombination mediator RecR -
  LPB402_RS00455 (LPB402_00455) - 88470..88757 (-) 288 WP_107792036.1 hypothetical protein -
  LPB402_RS00460 (LPB402_00460) - 88972..90222 (+) 1251 WP_003746931.1 lipoprotein-releasing ABC transporter permease subunit -
  LPB402_RS00465 (LPB402_00465) lolD 90215..90898 (+) 684 WP_107792035.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LPB402_RS00470 (LPB402_00470) recD 91031..92794 (+) 1764 WP_107792034.1 exodeoxyribonuclease V subunit alpha Machinery gene
  LPB402_RS00475 (LPB402_00475) - 92891..94090 (+) 1200 WP_049322759.1 hypothetical protein -
  LPB402_RS00480 (LPB402_00480) - 94193..94594 (-) 402 WP_219088619.1 RNA-binding S4 domain-containing protein -
  LPB402_RS00485 (LPB402_00485) - 94799..95758 (+) 960 WP_219088617.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  LPB402_RS00490 (LPB402_00490) tilS 95850..97205 (+) 1356 WP_219088615.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64880.08 Da        Isoelectric Point: 5.6486

>NTDB_id=589677 LPB402_RS00470 WP_107792034.1 91031..92794(+) (recD) [Neisseria sicca ATCC 29256]
MNPTDSILSSAADAAIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKADVDALSNLPNLVGNADKPLILQDRKLF
LGRMWQLEHDLAVEIKRLASAAAEEVNFMAASKSLSDWFDPKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPNIKAHLENLEGQTVHRLLKLRPPQMRPAFNHEHPLALDVLV
VDEASMLDLPLVLDLLRAVPTSCRLVLLGDENQLPSVGLGAVLAALSRPTVLDKETAEKLEVYLPNHGFEIKERPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQDYWQAVAENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKVSGETPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFPEKDG
FKKITISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTEGEEEARGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALADALERQFEQPDMQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=589677 LPB402_RS00470 WP_107792034.1 91031..92794(+) (recD) [Neisseria sicca ATCC 29256]
ATGAATCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCGGCCATTGCGTTTTTCCGCCGCCACGAAGTACAGGGCGC
ATCCGTTATTGAGCCTTATGTGGTTCGACTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTATTTGGATAAAGCGG
ATGTCGATGCCTTAAGCAACTTGCCGAATTTGGTCGGCAATGCGGATAAACCGCTTATCCTGCAAGACCGGAAATTGTTT
TTAGGGCGGATGTGGCAGTTGGAGCATGATTTGGCTGTCGAAATCAAACGGCTGGCAAGTGCCGCGGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGCGACTGGTTTGATCCTAAAGACAGTAAAGAGCAGAGGGATGCTGCGGCTTTGG
CCTTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGTACGGGTAAGACCACGACCGTCGCAAAGCTTTTGGGTCTG
ATTTGCAATAACAGTACGAAGCTGCCCCGTATTGCGTTGGCCGCGCCGACGGGCAAGGCGGCTGCGCATATGGCACGGGC
TTTGCAGCGGGCTTTAGATGGCTTTGATTTGTCTCCGAACATTAAAGCGCATTTGGAAAACTTGGAAGGGCAGACTGTCC
ATCGATTGTTGAAATTGCGGCCGCCGCAAATGCGCCCCGCGTTCAATCATGAACATCCGCTTGCTTTGGATGTTTTGGTG
GTGGATGAGGCTTCGATGTTGGATTTGCCGCTGGTGTTGGATTTATTGCGTGCCGTGCCGACCAGTTGTCGTTTGGTGTT
GCTTGGCGATGAAAACCAGTTGCCGTCGGTTGGCTTGGGTGCCGTATTGGCGGCGTTGTCGCGTCCGACGGTTTTGGATA
AAGAAACTGCTGAAAAGCTGGAAGTTTATCTGCCCAATCATGGCTTTGAGATTAAAGAGCGGCCTCAGGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGCCACCGTTTTGGTGCAGACAGCGGCATTGGTTGTTTGGCAAGGGCGGTGGTATCCGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGACAAGTTTCCCAAAGAGTTGGAAATGAAATCAGGCCGTCTGAAAGAGCAGG
TTGCTTTGCTGTATCAAAAGCAACAGGATTATTGGCAGGCCGTGGCAGAGAATAATGTTGCACTCGCCTATGGTCATGCT
GCCGATGTGGTGGTATTGGCGGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATATTTGCAACGGCA
AGGCAAGGTTTCGGGCGAAACGCCTTGGTTTGCCGGACAGATCATCATGATTACCCACAATGATTACATGCTGGAAGTGT
TTAACGGCGACATCGGGCTGATTATGAAAGATGAAGAATCGTTGAATGGCTTGTCTGCCTATTTTCCTGAGAAAGATGGA
TTCAAAAAAATTACCATCAGCCGTTTGCCCGATTTTGAATCGGCTTTTGCCATGACGGTGCACAAGAGCCAAGGTTCGGA
ATATCGGGAAGTATGGCTGTTGCCCCCGTCAGTGCCTGCAACGACGGAGGGCGAAGAGGAAGCCCGAGGATTGGATAAGG
CTTTGCTTTACACGGCCATTACCCGCGCGCGTGAACGTTTTGTGTTTTGGGGAAATGCAGAGGAATTGTGTCAGGCTGTG
GGATGCCACCAAAAACGCAGGACGGCATTGGCCGATGCCTTGGAACGGCAGTTTGAACAACCTGATATGCAGGCTTCTGT
TTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)

AAA domain (AAA_19)

(127-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.925

98.296

0.579