Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LPB400_RS08920 Genome accession   NZ_CP079818
Coordinates   1858094..1860319 (-) Length   741 a.a.
NCBI ID   WP_219088778.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1853094..1865319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS08895 (LPB400_08905) - 1853701..1854606 (-) 906 WP_219088769.1 DMT family transporter -
  LPB400_RS08900 (LPB400_08910) trpB 1854801..1856003 (-) 1203 WP_219088771.1 tryptophan synthase subunit beta -
  LPB400_RS08905 (LPB400_08915) - 1856115..1856525 (-) 411 WP_219088773.1 hypothetical protein -
  LPB400_RS08910 (LPB400_08920) - 1856530..1857132 (-) 603 WP_219088775.1 DNA glycosylase -
  LPB400_RS08915 (LPB400_08925) - 1857169..1857789 (-) 621 WP_107791964.1 phosphoribosylanthranilate isomerase -
  LPB400_RS08920 (LPB400_08930) comA 1858094..1860319 (-) 2226 WP_219088778.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LPB400_RS08935 (LPB400_08945) - 1860765..1862156 (+) 1392 WP_219088780.1 3'-5' exonuclease family protein -
  LPB400_RS08940 (LPB400_08950) - 1862354..1863145 (+) 792 WP_219088783.1 Cof-type HAD-IIB family hydrolase -
  LPB400_RS08945 (LPB400_08955) - 1863213..1863419 (-) 207 WP_003680520.1 DUF2788 domain-containing protein -
  LPB400_RS08950 (LPB400_08960) metZ 1863506..1864675 (-) 1170 WP_219088785.1 O-succinylhomoserine sulfhydrylase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80901.44 Da        Isoelectric Point: 9.8394

>NTDB_id=589658 LPB400_RS08920 WP_219088778.1 1858094..1860319(-) (comA) [Neisseria perflava strain LPB0400]
MAWWFVLPAWVVGVVLSFALPFVPSWWVWLAVIIGALALCRRFAVAWLALAVCMGMAFGVWRTGLVLAGQWPAGEATAKV
LTVEVADMPRDDGRRVQFAARAWDDRGQAFDLMLSDYQRRDWAVGSRWSVSARVKPVIGEVNVRGLNRETWALANGIDGM
GALGRDRKLVRQGGGFGLADMRDAVSRSWQRTADKYPEFSDGIGLMRALSIGEQSALRPPLWQAFRPLGLTHLVSISGLH
VTMVAVLFAWLIKRIFRYLPWIPAKPRVWILAGGVAGALFYALLAGFSVPTQRSVLMLAAFAWAWWRGSGGSGWTAWWQA
LAVVLLLDPLAVLGVGTWLSFGLVAALIWASSGRLKESGWRLAVRGQWAATVLSVVLLGYLFASLPLLSPLVNALAIPWF
SWVLTPLALLGSVFPFELVQLVAAFLAEYTLRGLVWLATVSPEFAVAAAPMPLLVLAMMAALLLLLPKGMGLKPWVCLVL
LGFVFYRPAKLEEGVARVTVMDAGQGLSVLIQTRNRNLLFDTGTEQVAQTGIVPSLNAMGVRRLDSLILSHHDIDHDGGF
QSVAAVGTDKLLAGQPEFYPNAEFCQEDKWQWDGVDFELLRPSENAGKEDNDQSCVLRVVANGKALLITGDLGVKGEAGL
IEKYGNALYSQVLVLGHHGSSTASSGSFLHTVSPQYAVASSGYANAYKHPTVAVQNRVRAHGITLLRTDLSGALVFALGQ
GDIFQGRLKKDKFYWQKKPFE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=589658 LPB400_RS08920 WP_219088778.1 1858094..1860319(-) (comA) [Neisseria perflava strain LPB0400]
ATGGCGTGGTGGTTTGTGTTGCCTGCTTGGGTGGTTGGGGTAGTGCTTTCGTTTGCGTTGCCGTTTGTGCCGTCATGGTG
GGTTTGGTTGGCTGTAATTATTGGCGCGCTTGCGTTGTGTCGAAGATTTGCTGTGGCCTGGTTGGCGCTGGCCGTCTGTA
TGGGCATGGCGTTTGGTGTGTGGCGGACCGGGCTGGTGTTGGCCGGTCAATGGCCTGCAGGGGAGGCGACGGCTAAAGTT
TTGACGGTTGAAGTGGCGGATATGCCGCGTGATGATGGTCGGCGTGTGCAGTTTGCGGCAAGGGCTTGGGATGATCGTGG
GCAGGCTTTTGATTTGATGTTGTCGGATTATCAGCGGCGCGATTGGGCGGTGGGCAGCAGGTGGTCTGTATCGGCGCGGG
TAAAGCCGGTAATCGGTGAAGTGAATGTGCGCGGTTTGAACCGTGAAACATGGGCTTTGGCCAATGGTATCGATGGCATG
GGTGCTTTGGGGCGCGACAGGAAACTCGTGCGGCAAGGTGGTGGTTTTGGTTTGGCTGATATGCGTGATGCGGTAAGCCG
GAGTTGGCAGAGAACGGCGGACAAATATCCTGAGTTTTCAGACGGCATAGGGCTGATGCGTGCTTTGAGTATTGGCGAGC
AATCGGCGTTGCGGCCGCCTTTGTGGCAGGCATTCCGGCCTTTGGGACTGACGCACTTGGTCAGTATTTCGGGCTTGCAT
GTGACGATGGTGGCGGTATTGTTTGCCTGGCTGATTAAGCGAATTTTCCGTTATTTGCCGTGGATTCCGGCAAAACCGCG
TGTGTGGATATTGGCTGGCGGTGTTGCCGGTGCTTTGTTTTATGCGCTTTTGGCCGGTTTTTCTGTACCGACGCAACGCA
GTGTGTTGATGTTGGCTGCGTTTGCGTGGGCATGGTGGCGCGGCAGTGGCGGCTCGGGCTGGACGGCGTGGTGGCAGGCC
TTGGCCGTTGTTTTGCTGTTGGACCCGTTGGCAGTATTGGGCGTGGGAACGTGGTTGTCTTTCGGTTTGGTTGCTGCTTT
GATTTGGGCTTCATCAGGCCGTCTGAAAGAGTCGGGTTGGCGTTTGGCTGTACGGGGGCAATGGGCGGCAACGGTATTGT
CGGTGGTATTGCTGGGCTATTTGTTTGCTTCGTTACCTTTGCTCAGTCCGTTGGTTAATGCGCTGGCTATTCCTTGGTTT
TCTTGGGTGTTGACGCCGTTGGCTTTGCTGGGTTCGGTTTTCCCGTTTGAACTTGTCCAGTTGGTAGCGGCATTTTTGGC
GGAATACACTTTGCGTGGTTTGGTATGGCTGGCTACGGTATCGCCTGAATTTGCCGTCGCAGCGGCGCCCATGCCTTTGC
TGGTGTTGGCGATGATGGCGGCTTTGCTGTTATTGTTGCCTAAAGGAATGGGCTTGAAACCTTGGGTATGTCTGGTTTTA
TTGGGCTTTGTGTTTTACCGTCCTGCCAAGTTGGAGGAGGGGGTGGCAAGAGTTACGGTGATGGATGCAGGGCAAGGTTT
GTCGGTGTTGATACAAACGCGTAACCGCAATCTTTTGTTTGATACGGGAACGGAGCAAGTGGCGCAAACAGGTATTGTGC
CGAGTTTGAACGCGATGGGTGTGCGCCGTTTGGACAGCTTGATTTTGTCGCACCATGATATTGACCATGACGGCGGTTTT
CAAAGTGTAGCGGCTGTCGGTACCGATAAATTGCTTGCCGGACAACCTGAGTTTTATCCGAATGCGGAGTTTTGCCAAGA
AGACAAATGGCAATGGGACGGCGTAGATTTCGAGTTGCTCAGGCCGTCTGAAAATGCGGGTAAGGAAGATAATGATCAAA
GCTGCGTATTGCGTGTCGTGGCAAACGGCAAAGCTTTGTTGATAACCGGCGATTTGGGCGTGAAGGGCGAGGCAGGTTTG
ATTGAGAAATACGGCAATGCGCTGTATAGCCAAGTGTTGGTATTGGGACATCACGGCAGCAGCACGGCTTCGTCAGGCAG
CTTTTTGCATACGGTTTCGCCACAATATGCCGTGGCATCCAGCGGCTATGCCAATGCCTACAAACATCCGACCGTTGCCG
TACAAAATCGTGTCCGCGCGCACGGCATTACTCTGTTGAGAACGGATTTGTCAGGCGCGTTGGTGTTTGCTTTGGGACAG
GGCGATATATTTCAAGGCCGTCTGAAAAAGGATAAGTTTTATTGGCAGAAGAAACCGTTTGAGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-679)

Competence protein (Competence)

(209-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

70.732

99.595

0.704